RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SEPT4O43236 478 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 KLRC4O43908 158 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 DUSP11O75319 330 aaKnown RBP17.16■□□□□ 0.34
UPF1-206ENST00000598471 RHOBTB3O94955 611 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 LGALS2P05162 132 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 HOXD8P13378 290 aaPredicted RBP17.16■□□□□ 0.34
UPF1-206ENST00000598471 PRKAR2AP13861 404 aaKnown RBP17.16■□□□□ 0.34
UPF1-206ENST00000598471 GUCY2CP25092 1073 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 CACNB2Q08289 660 aaPredicted RBP17.16■□□□□ 0.34
UPF1-206ENST00000598471 KMT5BQ4FZB7 885 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 ZNF658Q5TYW1 1059 aaPredicted RBP17.16■□□□□ 0.34
UPF1-206ENST00000598471 PLA2G4FQ68DD2 849 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 ISM2Q6H9L7 571 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 C1orf186Q6ZWK4 172 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 ANO5Q75V66 913 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 TNS4Q8IZW8 715 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 MLKLQ8NB16 471 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 ATP8B4Q8TF62 1192 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 BBXQ8WY36 941 aaPredicted RBP17.16■□□□□ 0.34
UPF1-206ENST00000598471 DNAJC19Q96DA6 116 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 REEP2Q9BRK0 252 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 RUSC1Q9BVN2 902 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 PANK4Q9NVE7 773 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 ERAP1Q9NZ08 941 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 ODF2LQ9ULJ1 636 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 COL4A3BPQ9Y5P4 624 aa17.16■□□□□ 0.34
UPF1-206ENST00000598471 A6NJR5 290 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 ADCY6O43306 1168 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 USO1O60763 962 aaKnown RBP17.15■□□□□ 0.34
UPF1-206ENST00000598471 FAM13AO94988 1023 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 RARBP10826 455 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 GAP43P17677 238 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 PPP1R2P41236 205 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 PSMD2Q13200 908 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 STIM1Q13586 685 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 GIT2Q14161 759 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 ARSHQ5FYA8 562 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 TRMT1LQ7Z2T5 733 aaKnown RBP17.15■□□□□ 0.34
UPF1-206ENST00000598471 EXOC8Q8IYI6 725 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 TRPV1Q8NER1 839 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 NIFKQ9BYG3 293 aaKnown RBP17.15■□□□□ 0.34
UPF1-206ENST00000598471 DNAJC25Q9H1X3 360 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 ZHX3Q9H4I2 956 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 CYP26B1Q9NR63 512 aa17.15■□□□□ 0.34
UPF1-206ENST00000598471 GOLGA6L3A6NEY3 463 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 HBP1O60381 514 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 DGAT1O75907 488 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 STBD1O95210 358 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 ATP4AP20648 1035 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 GRK4P32298 578 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 RFC5P40937 340 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 RAD51AP2Q09MP3 1159 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 COASYQ13057 564 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 PKN2Q16513 984 aaKnown RBP17.14■□□□□ 0.33
UPF1-206ENST00000598471 DPCR1Q3MIW9 517 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 MTERF2Q49AM1 385 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 CT47A1Q5JQC4 288 aaPredicted RBP17.14■□□□□ 0.33
UPF1-206ENST00000598471 TRIM50Q86XT4 487 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 MCPH1Q8NEM0 835 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 FAM200AQ8TCP9 573 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 DRC1Q96MC2 740 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 TRPC6Q9Y210 931 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 PTCH2Q9Y6C5 1203 aa17.14■□□□□ 0.33
UPF1-206ENST00000598471 NPHP3-ACAD11A0A0J9YXS1 232 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 FRMD3A2A2Y4 597 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 KPNA6O60684 536 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 PTGS1P23219 599 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 MARK3P27448 753 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 ZNF165P49910 485 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 POLGP54098 1239 aaPredicted RBP17.13■□□□□ 0.33
UPF1-206ENST00000598471 NPEPPSP55786 919 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 TRIM32Q13049 653 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 PLCB4Q15147 1175 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 FSCN1Q16658 493 aaKnown RBP17.13■□□□□ 0.33
UPF1-206ENST00000598471 HERC4Q5GLZ8 1057 aaPredicted RBP17.13■□□□□ 0.33
UPF1-206ENST00000598471 FAM26FQ5R3K3 315 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 MAP3K21Q5TCX8 1036 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 FBXO46Q6PJ61 603 aaPredicted RBP17.13■□□□□ 0.33
UPF1-206ENST00000598471 JPH2Q9BR39 696 aaPredicted RBP17.13■□□□□ 0.33
UPF1-206ENST00000598471 ATP6V0A4Q9HBG4 840 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 PARVGQ9HBI0 331 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 SEL1LQ9UBV2 794 aa17.13■□□□□ 0.33
UPF1-206ENST00000598471 MYH9P35579 1960 aaKnown RBP17.12■□□□□ 0.33
UPF1-206ENST00000598471 TMEM150BA6NC51 233 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 ZEB2O60315 1214 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 MSCO60682 206 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 HIP1RO75146 1068 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 KIF20AO95235 890 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 INHAP05111 366 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 ZNF286BP0CG31 522 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 GJA9P57773 515 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 CACNB1Q02641 598 aaPredicted RBP17.12■□□□□ 0.33
UPF1-206ENST00000598471 C11orf57Q6ZUT1 292 aaPredicted RBP17.12■□□□□ 0.33
UPF1-206ENST00000598471 GAS2L3Q86XJ1 694 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 SLC7A3Q8WY07 619 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 KIFAP3Q92845 792 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 LENG1Q96BZ8 264 aaPredicted RBP17.12■□□□□ 0.33
UPF1-206ENST00000598471 BPIFA3Q9BQP9 254 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 KATNAL1Q9BW62 490 aa17.12■□□□□ 0.33
UPF1-206ENST00000598471 UPF3AQ9H1J1 476 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms