RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SH3GLB2Q9NR46 395 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 HCSTQ9UBK5 93 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 GABBR1Q9UBS5 961 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 TRPV2Q9Y5S1 764 aa11.89□□□□□ -0.51
LIG1-213ENST00000596672 KDM3AQ9Y4C1 1321 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 CYP3A7-CYP3A51PA0A087WV96 503 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 WNT7AO00755 349 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 GRM6O15303 877 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 SLC37A4O43826 429 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 HBP1O60381 514 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 PFKFB2O60825 505 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 GPR32O75388 356 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 DGKIO75912 1065 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 CYP3A7P24462 503 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 DNAJB1P25685 340 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 GNA11P29992 359 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 NLRP5P59047 1200 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 SSRP1Q08945 709 aaKnown RBP11.88□□□□□ -0.51
LIG1-213ENST00000596672 MIS18BP1Q6P0N0 1132 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 TMEM192Q8IY95 271 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 BLIDQ8IZY5 108 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 DAGLBQ8NCG7 672 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 FBXO22Q8NEZ5 403 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 ETNPPLQ8TBG4 499 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 APBB2Q92870 758 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 ZNF668Q96K58 619 aaPredicted RBP11.88□□□□□ -0.51
LIG1-213ENST00000596672 SH2D3AQ9BRG2 576 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 PHF20Q9BVI0 1012 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 ADAMTS10Q9H324 1103 aa11.88□□□□□ -0.51
LIG1-213ENST00000596672 PLXNA4Q9HCM2 1894 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 H3BNC9 293 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 EML1O00423 815 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 DEXIO95424 95 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 VTNP04004 478 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 USP11P51784 963 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 CLCN3P51790 818 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 KRT76Q01546 638 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 TARBP2Q15633 366 aaKnown RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 ME3Q16798 604 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 INF2Q27J81 1249 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 KIZQ2M2Z5 673 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 Q4G0T1 1027 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 ZNF484Q5JVG2 852 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 FAM228AQ86W67 206 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 LRRC71Q8N4P6 559 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 ZNF579Q8NAF0 562 aaKnown RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 CCDC12Q8WUD4 166 aaPredicted RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 TNFRSF25Q93038 417 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 YME1L1Q96TA2 773 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 TSPYL2Q9H2G4 693 aaPredicted RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 DISC1Q9NRI5 854 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 TBC1D22BQ9NU19 505 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 RNF19AQ9NV58 838 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 LMCD1Q9NZU5 365 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 WRAP73Q9P2S5 460 aaPredicted RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 PCDHA10Q9Y5I2 948 aa11.87□□□□□ -0.51
LIG1-213ENST00000596672 MRPL42Q9Y6G3 142 aaKnown RBP11.87□□□□□ -0.51
LIG1-213ENST00000596672 CHMP2AO43633 222 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 GTPBP6O43824 516 aaPredicted RBP11.86□□□□□ -0.51
LIG1-213ENST00000596672 GTF2F1P35269 517 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIG1-213ENST00000596672 SLC26A2P50443 739 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 SETQ01105 290 aaPredicted RBP11.86□□□□□ -0.51
LIG1-213ENST00000596672 AKAP17AQ02040 695 aaKnown RBP11.86□□□□□ -0.51
LIG1-213ENST00000596672 GPM6BQ13491 265 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 DSC3Q14574 896 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 SKIV2LQ15477 1246 aaKnown RBP11.86□□□□□ -0.51
LIG1-213ENST00000596672 IER5Q5VY09 327 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 FAM160B1Q5W0V3 765 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 RSPH3Q86UC2 560 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 CCDC148Q8NFR7 591 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 HAS1Q92839 578 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 CLP1Q92989 425 aaKnown RBP11.86□□□□□ -0.51
LIG1-213ENST00000596672 VAV3Q9UKW4 847 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 ST3GAL5Q9UNP4 418 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 SQORQ9Y6N5 450 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 COL1A2P08123 1366 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 ADGRA3Q8IWK6 1321 aa11.86□□□□□ -0.51
LIG1-213ENST00000596672 C9IYK1 514 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 C5orf67F2Z3F1 127 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 JAK2O60674 1132 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 PSAPP07602 524 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 BMPR1AP36894 532 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 LTBRP36941 435 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 PRKCEQ02156 737 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 NR5A1Q13285 461 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 COL19A1Q14993 1142 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 TCEAL5Q5H9L2 206 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 FAM102BQ5T8I3 360 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 MCTP2Q6DN12 878 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 SMAP1Q8IYB5 467 aaPredicted RBP11.85□□□□□ -0.51
LIG1-213ENST00000596672 NME8Q8N427 588 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.85□□□□□ -0.51
LIG1-213ENST00000596672 BICD2Q8TD16 824 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 BBXQ8WY36 941 aaPredicted RBP11.85□□□□□ -0.51
LIG1-213ENST00000596672 MRPL38Q96DV4 380 aaKnown RBP11.85□□□□□ -0.51
LIG1-213ENST00000596672 UHRF1Q96T88 793 aaPredicted RBP11.85□□□□□ -0.51
LIG1-213ENST00000596672 RIT2Q99578 217 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 OSMRQ99650 979 aa11.85□□□□□ -0.51
LIG1-213ENST00000596672 KIF2CQ99661 725 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms