RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 DNAJC6O75061 913 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 SCG5P05408 212 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 SNRPB2P08579 225 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 IBSPP21815 317 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 MSX2P35548 267 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 GFRA1P56159 465 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 RPL11P62913 178 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 FOXL1Q12952 345 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 STRIP1Q5VSL9 837 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 ZNF662Q6ZS27 426 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 THEMISQ8N1K5 641 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 IER2Q9BTL4 223 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 SPC25Q9HBM1 224 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 NCOA5Q9HCD5 579 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 X6R8D5 127 aa5.32□□□□□ -1.56
SMCHD1-209ENST00000583441 TBX1O43435 398 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 EFCAB14O75071 495 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 NAT1P18440 290 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 GJA4P35212 333 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 KCNJ6P48051 423 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 GYS2P54840 703 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 GABREP78334 506 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 FAM209AQ5JX71 171 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 MBNL2Q5VZF2 373 aaKnown RBP5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 ANKRD13AQ8IZ07 590 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 DTX3Q8N9I9 347 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 NINJ1Q92982 152 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 OSBP2Q969R2 916 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 MFSD3Q96ES6 412 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 GPRC5CQ9NQ84 441 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 SFMBT1Q9UHJ3 866 aa5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 TIMM13Q9Y5L4 95 aaPredicted RBP5.31□□□□□ -1.56
SMCHD1-209ENST00000583441 IKBKBO14920 756 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 RPS6KA4O75676 772 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 DUSP8Q13202 625 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 INF2Q27J81 1249 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 TKFCQ3LXA3 575 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 TRIM61Q5EBN2 209 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 ACBD5Q5T8D3 534 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 YOD1Q5VVQ6 348 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 FOXB2Q5VYV0 432 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 STEAP3Q658P3 488 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 MAMDC2Q7Z304 686 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 NIM1KQ8IY84 436 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 LGR4Q9BXB1 951 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 PACSIN3Q9UKS6 424 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 NR2E1Q9Y466 385 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 CD2APQ9Y5K6 639 aa5.3□□□□□ -1.56
SMCHD1-209ENST00000583441 KCNQ2O43526 872 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 DLX3O60479 287 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 GRIA2P42262 883 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 GLRBP48167 497 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 SCRN1Q12765 414 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 PABPC4Q13310 644 aaKnown RBP eCLIP5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 CRHR2Q13324 411 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 NOLC1Q14978 699 aaKnown RBP eCLIP5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 PTPROQ16827 1216 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 DALRD3Q5D0E6 543 aaKnown RBP5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 ZMAT1Q5H9K5 638 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 SLC35F1Q5T1Q4 408 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 LCE1AQ5T7P2 110 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 E4F1Q66K89 784 aaPredicted RBP5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 FILIP1Q7Z7B0 1213 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 COPS5Q92905 334 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 PTPRN2Q92932 1015 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 TMEM169Q96HH4 297 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 ZFYVE21Q9BQ24 234 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 NRDE2Q9H7Z3 1164 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 INTS7Q9NVH2 962 aaKnown RBP5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 PLA2G3Q9NZ20 509 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 HSPBP1Q9NZL4 362 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 ZFP69BQ9UJL9 534 aa5.29□□□□□ -1.56
SMCHD1-209ENST00000583441 KRTAP23-1A1A580 65 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 AQP7O14520 342 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 CYP27B1O15528 508 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 TADA3O75528 432 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 ECI1P42126 302 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 KCNAB2Q13303 367 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 TESK1Q15569 626 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 GPR162Q16538 588 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 TM4SF20Q53R12 229 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 IQCEQ6IPM2 695 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 RSPO2Q6UXX9 243 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 STPG3Q8N7X2 389 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 TMEM145Q8NBT3 493 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 DCAF4Q8WV16 495 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 C1orf159Q96HA4 380 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 GPRC5BQ9NZH0 403 aa5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 MAGEC2Q9UBF1 373 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-209ENST00000583441 CAPN14A8MX76 684 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 MEFVO15553 781 aaPredicted RBP5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 CKMP06732 381 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 VIL1P09327 827 aaKnown RBP5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 C6orf222P0C671 652 aaPredicted RBP5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 GTF2A2P52657 109 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 CYP4F3Q08477 520 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 STYK1Q6J9G0 422 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 PROSER1Q86XN7 944 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 PPIL6Q8IXY8 311 aa5.27□□□□□ -1.57
SMCHD1-209ENST00000583441 Q8N1Y9 231 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms