RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PLEKHH3Q7Z736 793 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 REXO1L1PQ8IX06 675 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 EFHBQ8N7U6 833 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 FOXB1Q99853 325 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 RTEL1Q9NZ71 1219 aa9.03□□□□□ -0.96
SS18-214ENST00000580003 ARID1BQ8NFD5 2236 aaPredicted RBP9.03□□□□□ -0.96
SS18-214ENST00000580003 A0A0G2JLL6 359 aaPredicted RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 PTX3P26022 381 aaPredicted RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 ADCY8P40145 1251 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 IL2P60568 153 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 ALDH6A1Q02252 535 aaKnown RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 ROM1Q03395 351 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 EPHA7Q15375 998 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 CREB3L3Q68CJ9 461 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 RTN4RL1Q86UN2 441 aaPredicted RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 ZZZ3Q8IYH5 903 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 IFNL2Q8IZJ0 200 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 FOXRED1Q96CU9 486 aaPredicted RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 GPR101Q96P66 508 aaPredicted RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 H2AFY2Q9P0M6 372 aaPredicted RBP9.02□□□□□ -0.97
SS18-214ENST00000580003 ADAM29Q9UKF5 820 aa9.02□□□□□ -0.97
SS18-214ENST00000580003 UBA6A0AVT1 1052 aaPredicted RBP9.01□□□□□ -0.97
SS18-214ENST00000580003 APEX1P27695 318 aaKnown RBP9.01□□□□□ -0.97
SS18-214ENST00000580003 SOX5P35711 763 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 ADCY1Q08828 1119 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 TTC38Q5R3I4 469 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 ZFYVE27Q5T4F4 411 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 ERICH6BQ5W0A0 696 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 DDX46Q7L014 1031 aaKnown RBP9.01□□□□□ -0.97
SS18-214ENST00000580003 OTOP2Q7RTS6 562 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 FERMT3Q86UX7 667 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 C11orf74Q86VG3 221 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 KBTBD2Q8IY47 623 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 SMC1BQ8NDV3 1235 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 MBD6Q96DN6 1003 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 AJUBAQ96IF1 538 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 SCYL1Q96KG9 808 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 C16orf92Q96LL3 132 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 CAAP1Q9H8G2 361 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 DUSP10Q9Y6W6 482 aa9.01□□□□□ -0.97
SS18-214ENST00000580003 MASP1P48740 699 aa9□□□□□ -0.97
SS18-214ENST00000580003 CD83Q01151 205 aa9□□□□□ -0.97
SS18-214ENST00000580003 SLC6A3Q01959 620 aa9□□□□□ -0.97
SS18-214ENST00000580003 EGFLAMQ63HQ2 1017 aa9□□□□□ -0.97
SS18-214ENST00000580003 KANK2Q63ZY3 851 aa9□□□□□ -0.97
SS18-214ENST00000580003 RALYLQ86SE5 291 aaKnown RBP9□□□□□ -0.97
SS18-214ENST00000580003 THNSL2Q86YJ6 484 aa9□□□□□ -0.97
SS18-214ENST00000580003 CHAC2Q8WUX2 184 aa9□□□□□ -0.97
SS18-214ENST00000580003 USP7Q93009 1102 aa9□□□□□ -0.97
SS18-214ENST00000580003 C20orf173Q96LM9 149 aa9□□□□□ -0.97
SS18-214ENST00000580003 TUBGCP5Q96RT8 1024 aa9□□□□□ -0.97
SS18-214ENST00000580003 CARD11Q9BXL7 1154 aa9□□□□□ -0.97
SS18-214ENST00000580003 INVSQ9Y283 1065 aa9□□□□□ -0.97
SS18-214ENST00000580003 CSF2RBP32927 897 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 LSSP48449 732 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 MAP3K12Q12852 859 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 TOP3AQ13472 1001 aaPredicted RBP8.99□□□□□ -0.97
SS18-214ENST00000580003 USP10Q14694 798 aaKnown RBP8.99□□□□□ -0.97
SS18-214ENST00000580003 SURF1Q15526 300 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 CT47A1Q5JQC4 288 aaPredicted RBP8.99□□□□□ -0.97
SS18-214ENST00000580003 SLFN12LQ6IEE8 588 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 MAML3Q96JK9 1138 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 KATNBL1Q9H079 304 aa8.99□□□□□ -0.97
SS18-214ENST00000580003 B4GALT3O60512 393 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 FKBP9O95302 570 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 PRLP01236 227 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 CD40P25942 277 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 STAT3P40763 770 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 ETV4P43268 484 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 KCNQ1P51787 676 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 MOGSQ13724 837 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 DHCR24Q15392 516 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 GRAMD4Q6IC98 578 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 TIGD7Q6NT04 549 aaPredicted RBP8.98□□□□□ -0.97
SS18-214ENST00000580003 ESRP1Q6NXG1 681 aaKnown RBP8.98□□□□□ -0.97
SS18-214ENST00000580003 LILRA6Q6PI73 481 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 FKBP9P1Q75LS8 142 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 RNF180Q86T96 592 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 C7orf31Q8N865 590 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 KRTAP9-9Q9BYP9 154 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 KRTAP9-4Q9BYQ2 154 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 ZDHHC5Q9C0B5 715 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 TMX1Q9H3N1 280 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 PRKAB1Q9Y478 270 aa8.98□□□□□ -0.97
SS18-214ENST00000580003 A0A0G2JNJ9 132 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 PRICKLE3O43900 615 aaPredicted RBP8.97□□□□□ -0.97
SS18-214ENST00000580003 B4GALT4O60513 344 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 HMGCRP04035 888 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 ZNF568Q3ZCX4 644 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 PRAMEF9Q5VWM5 478 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 ARHGEF18Q6ZSZ5 1173 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 GPR155Q7Z3F1 870 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 PHYKPLQ8IUZ5 450 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 UBR7Q8N806 425 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 RELTQ969Z4 430 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 SPTLC3Q9NUV7 552 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 Q9UFV3 132 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 CDC42EP3Q9UKI2 254 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 ZNF536O15090 1300 aa8.97□□□□□ -0.97
SS18-214ENST00000580003 ADCYAP1R1P41586 468 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms