RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PRR29P0C7W0 189 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 CUL4BQ13620 913 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 PLCB4Q15147 1175 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 RINT1Q6NUQ1 792 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 PADI6Q6TGC4 694 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 TRIM50Q86XT4 487 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 EXOC8Q8IYI6 725 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 TRIML1Q8N9V2 468 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 SH3TC2Q8TF17 1288 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 DDX12PQ92771 950 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 CEP170P1Q96L14 293 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 KATNAL1Q9BW62 490 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 GTPBP4Q9BZE4 634 aaKnown RBP11.95□□□□□ -0.5
SS18-213ENST00000579640 TUT1Q9H6E5 874 aaKnown RBP11.95□□□□□ -0.5
SS18-213ENST00000579640 CYP26B1Q9NR63 512 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 RMND1Q9NWS8 449 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 PCDHA5Q9Y5H7 936 aa11.95□□□□□ -0.5
SS18-213ENST00000579640 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.94□□□□□ -0.5
SS18-213ENST00000579640 SYCE3A1L190 88 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 DGAT1O75907 488 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 F2P00734 622 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 ZNF286BP0CG31 522 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 GUCY2CP25092 1073 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 SARSP49591 514 aaKnown RBP11.94□□□□□ -0.5
SS18-213ENST00000579640 ASIC1P78348 528 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 KCNB1Q14721 858 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 GNASQ5JWF2 1037 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 SASS6Q6UVJ0 657 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 C1orf186Q6ZWK4 172 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 UNC13DQ70J99 1090 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 RNF180Q86T96 592 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 PCSK9Q8NBP7 692 aaKnown RBP11.94□□□□□ -0.5
SS18-213ENST00000579640 KLHDC9Q8NEP7 349 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.94□□□□□ -0.5
SS18-213ENST00000579640 GZF1Q9H116 711 aaPredicted RBP11.94□□□□□ -0.5
SS18-213ENST00000579640 BLZF1Q9H2G9 400 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 COL1A2P08123 1366 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 ARID2Q68CP9 1835 aa11.94□□□□□ -0.5
SS18-213ENST00000579640 RPN1P04843 607 aaKnown RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 MYL3P08590 195 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 MARK3P27448 753 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 RFC5P40937 340 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 ZNF445P59923 1031 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 BEX3Q00994 111 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 TARBP2Q15633 366 aaKnown RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 ARSHQ5FYA8 562 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 ZNF484Q5JVG2 852 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 PLA2G4FQ68DD2 849 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 CCDC65Q8IXS2 484 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 MCPH1Q8NEM0 835 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 DNAJC19Q96DA6 116 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 JPH2Q9BR39 696 aaPredicted RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 MTG1Q9BT17 334 aaPredicted RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 RUSC1Q9BVN2 902 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 ODF2LQ9ULJ1 636 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 TRPC6Q9Y210 931 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 TBCAO75347 108 aaKnown RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 PGK1P00558 417 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 CCDC192P0DO97 292 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 CASP1P29466 404 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 NPEPPSP55786 919 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 PURAQ00577 322 aaKnown RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 GIT2Q14161 759 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 MTERF2Q49AM1 385 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 LHX8Q68G74 356 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 DYMQ7RTS9 669 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 TRMT1LQ7Z2T5 733 aaKnown RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 ERCC4Q92889 916 aaPredicted RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 ATP6V0A4Q9HBG4 840 aa11.93□□□□□ -0.5
SS18-213ENST00000579640 PAK6Q9NQU5 681 aaPredicted RBP11.93□□□□□ -0.5
SS18-213ENST00000579640 FRMPD3Q5JV73 1810 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 FRMD3A2A2Y4 597 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 TMEM150BA6NC51 233 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 MYADML2A6NDP7 307 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 HAS3O00219 553 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 GAS2O43903 313 aaKnown RBP11.92□□□□□ -0.5
SS18-213ENST00000579640 KLRC4O43908 158 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 USO1O60763 962 aaKnown RBP11.92□□□□□ -0.5
SS18-213ENST00000579640 CABYRO75952 493 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 RHOBTB3O94955 611 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 IDEP14735 1019 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 GAP43P17677 238 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 PSEN2P49810 448 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 POLGP54098 1239 aaPredicted RBP11.92□□□□□ -0.5
SS18-213ENST00000579640 MFSD10Q14728 455 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 ARRDC4Q8NCT1 418 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 SLC7A3Q8WY07 619 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 KAT2BQ92831 832 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 REEP2Q9BRK0 252 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 TSEN34Q9BSV6 310 aaKnown RBP11.92□□□□□ -0.5
SS18-213ENST00000579640 UNC93B1Q9H1C4 597 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 RNPEPQ9H4A4 650 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 DHX33Q9H6R0 707 aaKnown RBP11.92□□□□□ -0.5
SS18-213ENST00000579640 PRDM10Q9NQV6 1147 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 EXOC1Q9NV70 894 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 MAN1B1Q9UKM7 699 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 COL4A3BPQ9Y5P4 624 aa11.92□□□□□ -0.5
SS18-213ENST00000579640 MOXD2PA6NHM9 499 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 RRN3P2A6NIE6 340 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 MAGEB2O15479 319 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms