RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 SLITRK3O94933 977 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 TIMP1P01033 207 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 VTNP04004 478 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 CKBP12277 381 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 CAPN2P17655 700 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 PDCP20941 246 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 THPOP40225 353 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 TRAPPC10P48553 1259 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 MKRN4PQ13434 485 aaPredicted RBP8.87□□□□□ -0.99
CCDC40-215ENST00000576033 RILPL1Q5EBL4 403 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 MTHFD1LQ6UB35 978 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 USP49Q70CQ1 688 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 BRAPQ7Z569 592 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 TMCO2Q7Z6W1 182 aaPredicted RBP8.87□□□□□ -0.99
CCDC40-215ENST00000576033 CATSPER3Q86XQ3 398 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 TPH2Q8IWU9 490 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 SLFN12Q8IYM2 578 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 NAP1L4Q99733 375 aaKnown RBP8.87□□□□□ -0.99
CCDC40-215ENST00000576033 GDF15Q99988 308 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 MMTAG2Q9BU76 263 aaKnown RBP8.87□□□□□ -0.99
CCDC40-215ENST00000576033 PRO3102Q9H379 93 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 CDHR5Q9HBB8 845 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 POLD4Q9HCU8 107 aa8.87□□□□□ -0.99
CCDC40-215ENST00000576033 TFIP11Q9UBB9 837 aaKnown RBP8.87□□□□□ -0.99
CCDC40-215ENST00000576033 CHD7Q9P2D1 2997 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 MBLAC1A4D2B0 266 aaPredicted RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 NBNO60934 754 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 IQCF3P0C7M6 154 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 KLRC1P26715 233 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 SFNP31947 248 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 FXR2P51116 673 aaKnown RBP eCLIP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 DNM1Q05193 864 aaKnown RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 PTPN11Q06124 597 aaPredicted RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 MGAT3Q09327 533 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 PTK7Q13308 1070 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 EPHA7Q15375 998 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 ZRSR1Q15695 479 aaKnown RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 TPRNQ4KMQ1 711 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 PRPF38BQ5VTL8 546 aaKnown RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 FAM109BQ6ICB4 259 aaPredicted RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 LRRC8DQ7L1W4 858 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 KSR1Q8IVT5 923 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 LINC01465Q8N7H1 131 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 IGSF22Q8N9C0 903 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 TMEM87AQ8NBN3 555 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 SNX29Q8TEQ0 813 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 TMEM40Q8WWA1 233 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 PNMA5Q96PV4 448 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 HSD17B14Q9BPX1 270 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 LMBRD1Q9NUN5 540 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 PRKAG2Q9UGJ0 569 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 FBXO2Q9UK22 296 aaPredicted RBP8.86□□□□□ -0.99
CCDC40-215ENST00000576033 NR2E3Q9Y5X4 410 aa8.86□□□□□ -0.99
CCDC40-215ENST00000576033 NRCAMQ92823 1304 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 COL4A6Q14031 1691 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 SOX1O00570 391 aaPredicted RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 TRAK2O60296 914 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 HBP1O60381 514 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 CHRNA1P02708 482 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 P4HBP07237 508 aaKnown RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 GHRP10912 638 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 FGFR4P22455 802 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 YWHABP31946 246 aaKnown RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 QARSP47897 775 aaKnown RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 PSMC5P62195 406 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 FPGSQ05932 587 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 SHHQ15465 462 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 TARBP2Q15633 366 aaKnown RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 KIZQ2M2Z5 673 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 TMEM266Q2M3C6 531 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 SKOR2Q2VWA4 1001 aaPredicted RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 MFSD5Q6N075 450 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 MAEAQ7L5Y9 396 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 OTOP2Q7RTS6 562 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 METTL13Q8N6R0 699 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 BBXQ8WY36 941 aaPredicted RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 CSRNP2Q9H175 543 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 GDPD2Q9HCC8 539 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 GPRC5CQ9NQ84 441 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 XPNPEP1Q9NQW7 623 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 CXXC1Q9P0U4 656 aaPredicted RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 LRWD1Q9UFC0 647 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 GINS2Q9Y248 185 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 CDY2AQ9Y6F7 541 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 SPTBN5Q9NRC6 3674 aaKnown RBP8.85□□□□□ -0.99
CCDC40-215ENST00000576033 COL1A2P08123 1366 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 REV3LO60673 3130 aa8.85□□□□□ -0.99
CCDC40-215ENST00000576033 A0A087X0B3 334 aa8.84□□□□□ -0.99
CCDC40-215ENST00000576033 E9PMD0 336 aa8.84□□□□□ -0.99
CCDC40-215ENST00000576033 USO1O60763 962 aaKnown RBP8.84□□□□□ -0.99
CCDC40-215ENST00000576033 CSDE1O75534 798 aaKnown RBP8.84□□□□□ -0.99
CCDC40-215ENST00000576033 SELPP16109 830 aa8.84□□□□□ -0.99
CCDC40-215ENST00000576033 CCT6AP40227 531 aaKnown RBP8.84□□□□□ -0.99
CCDC40-215ENST00000576033 RBL2Q08999 1139 aa8.84□□□□□ -0.99
CCDC40-215ENST00000576033 GRB10Q13322 594 aa8.84□□□□□ -0.99
CCDC40-215ENST00000576033 ORC2Q13416 577 aaPredicted RBP8.84□□□□□ -0.99
CCDC40-215ENST00000576033 KARSQ15046 597 aaKnown RBP8.84□□□□□ -0.99
CCDC40-215ENST00000576033 KLHL40Q2TBA0 621 aa8.84□□□□□ -0.99
CCDC40-215ENST00000576033 XKR3Q5GH77 459 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms