RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	CDKAL1	Q5VV42	579 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	FSTL4	Q6MZW2	842 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	TIGD7	Q6NT04	549 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	OGFOD3	Q6PK18	319 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	LVRN	Q6Q4G3	990 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	PAOX	Q6QHF9	649 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	SHISA2	Q6UWI4	295 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	CYP2R1	Q6VVX0	501 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	RNF111	Q6ZNA4	994 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	C22orf34	Q6ZV56	151 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	DAAM2	Q86T65	1068 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	CXorf67	Q86X51	503 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	PPHLN1	Q8NEY8	458 aa	Known RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	PIP4K2C	Q8TBX8	421 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	SH3RF2	Q8TEC5	729 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	AUTS2	Q8WXX7	1259 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	LRTOMT	Q8WZ04	291 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	PHKB	Q93100	1093 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	SKA1	Q96BD8	255 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	TRIM11	Q96F44	468 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	FAM46A	Q96IP4	442 aa	Known RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	MPP4	Q96JB8	637 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	C16orf92	Q96LL3	132 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	TBATA	Q96M53	351 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	HEXIM2	Q96MH2	286 aa	Known RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	NEUROD6	Q96NK8	337 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	UBL7	Q96S82	380 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	LRFN3	Q9BTN0	628 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	VPS11	Q9H270	941 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	KCNF1	Q9H3M0	494 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	EPB41L1	Q9H4G0	881 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	PGAP2	Q9UHJ9	254 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	USP21	Q9UK80	565 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	SRPK3	Q9UPE1	567 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	COA3	Q9Y2R0	106 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	NUB1	Q9Y5A7	615 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	CCDC154	A6NI56	674 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	WASH4P	A8MWX3	477 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	RNF225	M0QZC1	329 aa	Predicted RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	FOXP2	O15409	715 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	EPB41L2	O43491	1005 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	ZNF500	O60304	480 aa	Predicted RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	PPP1R11	O60927	126 aa	Predicted RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	APOL3	O95236	402 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	AGR2	O95994	175 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	LPL	P06858	475 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	CELA2B	P08218	269 aa	Predicted RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	FAM163B	P0C2L3	166 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	SLURP2	P0DP57	97 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	VSIG8	P0DPA2	414 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	SRGN	P10124	158 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MYF5	P13349	255 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	HOXB4	P17483	251 aa	Predicted RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	ABCB4	P21439	1286 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	TNFSF4	P23510	183 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	FPR2	P25090	351 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	RPL10	P27635	214 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	SDHA	P31040	664 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	GJA4	P35212	333 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	PPM1A	P35813	382 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MAPK9	P45984	424 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	FNTB	P49356	437 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MANF	P55145	182 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	LGALS4	P56470	323 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	GEMIN4	P57678	1058 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	GPSM2	P81274	684 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	CDK17	Q00537	523 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	KRT76	Q01546	638 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	DDX10	Q13206	875 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	TBX2	Q13207	712 aa	Predicted RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	SNX17	Q15036	470 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MUM1	Q2TAK8	710 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	UVSSA	Q2YD98	709 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	ANO4	Q32M45	955 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	CYP27C1	Q4G0S4	372 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	CCDC38	Q502W7	563 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	PAN2	Q504Q3	1202 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	CCDC157	Q569K6	752 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	PRRT3	Q5FWE3	981 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	FAM209B	Q5JX69	171 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	DGKK	Q5KSL6	1271 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	CATSPERE	Q5SY80	951 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MROH9	Q5TGP6	573 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	JAKMIP3	Q5VZ66	844 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	IZUMO3	Q5VZ72	239 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MBNL2	Q5VZF2	373 aa	Known RBP	2.53	□□□□□ -2
CHD3-217	ENST00000574022	BTBD8	Q5XKL5	378 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	HLA-DQA1	Q5Y7H0	255 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	LYPD4	Q6UWN0	246 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	NLRP10	Q86W26	655 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	PHYKPL	Q8IUZ5	450 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	FAM20C	Q8IXL6	584 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	FAM9B	Q8IZU0	186 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	OR2C3	Q8N628	320 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	MYCT1	Q8N699	235 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	PDILT	Q8N807	584 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	C7orf31	Q8N865	590 aa		2.53	□□□□□ -2
CHD3-217	ENST00000574022	TMEM52	Q8NDY8	209 aa		2.53	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms