RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	GOPC	Q9HD26	462 aa		18.64	■□□□□ 0.57
VPS53-215	ENST00000573028	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.64	■□□□□ 0.57
VPS53-215	ENST00000573028	SERPINB2	P05120	415 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	FRMD5	Q7Z6J6	570 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	CERS5	Q8N5B7	392 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	LRRC57	Q8N9N7	239 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	SCFD2	Q8WU76	684 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	RUSC1	Q9BVN2	902 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	FGG	P02679	453 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	EEF2	P13639	858 aa	Known RBP	18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	IBSP	P21815	317 aa	Predicted RBP	18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	ECHS1	P30084	290 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	DHX9	Q08211	1270 aa	Known RBP	18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	SLFN13	Q68D06	897 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	FOXR2	Q6PJQ5	311 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	TMEM59L	Q9UK28	342 aa		18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	BZW2	Q9Y6E2	419 aa	Known RBP	18.63	■□□□□ 0.57
VPS53-215	ENST00000573028	SPDYE3	A6NKU9	549 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	DDX3X	O00571	662 aa	Known RBP eCLIP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	GALC	P54803	685 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	ZNF844	Q08AG5	666 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	IFFO1	Q0D2I5	559 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	KRT71	Q3SY84	523 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	MICALCL	Q6ZW33	695 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	SLFN12	Q8IYM2	578 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	RDH13	Q8NBN7	331 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	SMIM23	A6NLE4	172 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	DCDC2C	A8MYV0	355 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	ZNF211	Q13398	564 aa	Predicted RBP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	CUL1	Q13616	776 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	C15orf52	Q6ZUT6	534 aa	Known RBP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	PLCB1	Q9NQ66	1216 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	ATP8A1	Q9Y2Q0	1164 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	NR2E1	Q9Y466	385 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	MYH4	Q9Y623	1939 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	FAM86B1	E9PN63	330 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	FAM86B2	P0C5J1	330 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	SPATA31C1	P0DKV0	1188 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	NMT1	P30419	496 aa	Known RBP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	RBM5	P52756	815 aa	Known RBP eCLIP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	CTTN	Q14247	550 aa	Known RBP	18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	PLS1	Q14651	629 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	EPHA7	Q15375	998 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	ARHGAP44	Q17R89	818 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	CD302	Q8IX05	232 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	SLC35C1	Q96A29	364 aa		18.62	■□□□□ 0.57
VPS53-215	ENST00000573028	C10orf76	Q5T2E6	689 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	KCNV1	Q6PIU1	500 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	ACTRT1	Q8TDG2	376 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	18.61	■□□□□ 0.57	1e-6	■■■■■ 243.8
VPS53-215	ENST00000573028	PCDHAC2	Q9Y5I4	1007 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	MEIS2	O14770	477 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	ZBTB39	O15060	712 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	RGL2	O15211	777 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	EVI5	O60447	810 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	RPL13	P26373	211 aa	Known RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	POLD1	P28340	1107 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	CYP2J2	P51589	502 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	SF3B2	Q13435	895 aa	Known RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	CDC42EP5	Q6NZY7	148 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	MYCT1	Q8N699	235 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	ARFGAP2	Q8N6H7	521 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	LMBR1	Q8WVP7	490 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	ZC3H12C	Q9C0D7	883 aa	Known RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	TRAF3IP3	Q9Y228	551 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	PITPNM2	Q9BZ72	1349 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	HOXA7	P31268	230 aa	Predicted RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	STAT1	P42224	750 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	MAGOH	P61326	146 aa	Known RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	TPH2	Q8IWU9	490 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	SYT2	Q8N9I0	419 aa	Predicted RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	MAGOHB	Q96A72	148 aa	Known RBP	18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	LRRC4C	Q9HCJ2	640 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	AMFR	Q9UKV5	643 aa		18.61	■□□□□ 0.57
VPS53-215	ENST00000573028	SBF2	Q86WG5	1849 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	TLDC2	A0PJX2	215 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	BUB1B	O60566	1050 aa	Predicted RBP	18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	GDF11	O95390	407 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	COG2	Q14746	738 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	CCDC26	Q8TAB7	109 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	NAP1L4	Q99733	375 aa	Known RBP	18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	SWAP70	Q9UH65	585 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	ASTN1	O14525	1302 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	PDXK	O00764	312 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	LRRN2	O75325	713 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	FAM13A	O94988	1023 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	TRIM49	P0CI25	452 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	TRIM49C	P0CI26	452 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	UBXN2A	P68543	259 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	DPY19L2P1	Q6NXN4	242 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	UHMK1	Q8TAS1	419 aa	Known RBP	18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	CYFIP2	Q96F07	1278 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	TYW1	Q9NV66	732 aa	Known RBP	18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	UTP11	Q9Y3A2	253 aa	Known RBP	18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	RABGAP1	Q9Y3P9	1069 aa		18.6	■□□□□ 0.57
VPS53-215	ENST00000573028	PLIN4	Q96Q06	1357 aa		18.59	■□□□□ 0.57
VPS53-215	ENST00000573028	FRMD3	A2A2Y4	597 aa		18.59	■□□□□ 0.57
VPS53-215	ENST00000573028	FAM107A	O95990	144 aa		18.59	■□□□□ 0.57
VPS53-215	ENST00000573028	GUCY2C	P25092	1073 aa		18.59	■□□□□ 0.57

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