RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GLE1Q53GS7 698 aaKnown RBP11.74□□□□□ -0.53
CLK3-226ENST00000569406 SLC10A5Q5PT55 438 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 FOXP4Q8IVH2 680 aaPredicted RBP11.74□□□□□ -0.53
CLK3-226ENST00000569406 MIGA1Q8NAN2 632 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 DNAJC9Q8WXX5 260 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 FAM84BQ96KN1 310 aaPredicted RBP11.74□□□□□ -0.53
CLK3-226ENST00000569406 CCT7Q99832 543 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 FAM114A2Q9NRY5 505 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 INTS13Q9NVM9 706 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 SSX2IPQ9Y2D8 614 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 TMEM110-MUSTN1A8MSY1 372 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 KRT16P08779 473 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 GSTA2P09210 222 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 METAP2P50579 478 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLK3-226ENST00000569406 EPHB4P54760 987 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 ADARP55265 1226 aaKnown RBP11.74□□□□□ -0.53
CLK3-226ENST00000569406 SLC39A14Q15043 492 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 MICU3Q86XE3 530 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 IRF2BPLQ9H1B7 796 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 CCDC68Q9H2F9 335 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 ATAD3AQ9NVI7 634 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 CIDEBQ9UHD4 219 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 TTF2Q9UNY4 1162 aaKnown RBP11.74□□□□□ -0.53
CLK3-226ENST00000569406 AGAP1Q9UPQ3 857 aa11.74□□□□□ -0.53
CLK3-226ENST00000569406 GOLGA8AA7E2F4 631 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 PEX14O75381 377 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ATP1A1P05023 1023 aaKnown RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 FGRP09769 529 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 GALK1P51570 392 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 AMPD2Q01433 879 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 WDR78Q5VTH9 848 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ANO1Q5XXA6 986 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 SDR42E1Q8WUS8 393 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 LENG1Q96BZ8 264 aaPredicted RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 MAELQ96JY0 434 aaKnown RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 DDX23Q9BUQ8 820 aaKnown RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 NACAP1Q9BZK3 213 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 JADE2Q9NQC1 790 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 CNTNAP4Q9C0A0 1308 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 SPTLC2O15270 562 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ITGA2BP08514 1039 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 POTEIP0CG38 1075 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ALADP13716 330 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 BDNFP23560 247 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 HALP42357 657 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 GRIN1Q05586 938 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 TMEM214Q6NUQ4 689 aaKnown RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 PPP2R3CQ969Q6 453 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ZKSCAN3Q9BRR0 538 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 LRRC1Q9BTT6 524 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 TRIM10Q9UDY6 481 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 STK10O94804 968 aaKnown RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 IL4RP24394 825 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 SERPINB3P29508 390 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 MSH2P43246 934 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ITIH3Q06033 890 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ITGB3BPQ13352 177 aaPredicted RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 NEK10Q6ZWH5 1172 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 SESTD1Q86VW0 696 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 IFT81Q8WYA0 676 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 RAPGEF5Q92565 580 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 CASP10Q92851 521 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 PTPRN2Q92932 1015 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ALG1Q9BT22 464 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 ECT2Q9H8V3 914 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 NKX1-2Q9UD57 310 aaPredicted RBP11.73□□□□□ -0.53
CLK3-226ENST00000569406 ITGB1BP2Q9UKP3 347 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 LRRC42Q9Y546 428 aa11.73□□□□□ -0.53
CLK3-226ENST00000569406 STK36Q9NRP7 1315 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 PFKFB1P16118 471 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 BMP6P22004 513 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 TBL3Q12788 808 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 KIF5AQ12840 1032 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 FAM98CQ17RN3 349 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 RC3H1Q5TC82 1133 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 PHLDB3Q6NSJ2 640 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 TXNRD3Q86VQ6 643 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 CMTR1Q8N1G2 835 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 PPFIBP2Q8ND30 876 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 EIF2AQ9BY44 585 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 TAF1DQ9H5J8 278 aaPredicted RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 DKK3Q9UBP4 350 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 TRIM33Q9UPN9 1127 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 PLCG2P16885 1265 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 CD97P48960 835 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 PEX5P50542 639 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 NPY5RQ15761 445 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 UBE2Q1Q7Z7E8 422 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 ZC3H18Q86VM9 953 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 ANKRD27Q96NW4 1050 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 CATSPER2Q96P56 530 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 DDX50Q9BQ39 737 aaKnown RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 LRRC27Q9C0I9 530 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 SLC12A4Q9UP95 1085 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 CYP2D7A0A087X1C5 515 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 HMGB1P1B2RPK0 211 aaPredicted RBP11.72□□□□□ -0.53
CLK3-226ENST00000569406 WNT7AO00755 349 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 GSTA1P08263 222 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 VDRP11473 427 aa11.72□□□□□ -0.53
CLK3-226ENST00000569406 IFNAR1P17181 557 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms