RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SERPINB13Q9UIV8 391 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 ITGB3BPQ13352 177 aaPredicted RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 NAA25Q14CX7 972 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 LRRC14Q15048 493 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 KNOP1Q1ED39 458 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 HS2ST1Q7LGA3 356 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 CCDC105Q8IYK2 499 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 SAMD15Q9P1V8 674 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 CICQ96RK0 1608 aaPredicted RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 AKAP3O75969 853 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 CCDC172P0C7W6 258 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 NMT1P30419 496 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 SEMA3FQ13275 785 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 SNCBQ16143 134 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 QRICH1Q2TAL8 776 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 ZC2HC1CQ53FD0 456 aaPredicted RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 FAM186BQ8IYM0 893 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 ANKS4BQ8N8V4 417 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 TPCN2Q8NHX9 752 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 RAPGEF5Q92565 580 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 PCIF1Q9H4Z3 704 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 DDX20Q9UHI6 824 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 EXOC3O60645 756 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 GJC1P36383 396 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 DR1Q01658 176 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 ZKSCAN8Q15776 578 aaPredicted RBP15.74■□□□□ 0.11
VPS35-210ENST00000568784 SYCE1Q8N0S2 351 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 ARHGEF1Q92888 912 aaKnown RBP15.74■□□□□ 0.11
VPS35-210ENST00000568784 LEMD3Q9Y2U8 911 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 PCDHGC5Q9Y5F6 944 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 CFBP00751 764 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 PON1P27169 355 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 AADACL2Q6P093 401 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 PHLDB2Q86SQ0 1253 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 TBC1D1Q86TI0 1168 aaPredicted RBP15.74■□□□□ 0.11
VPS35-210ENST00000568784 PIK3R5Q8WYR1 880 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 N4BP2L2Q92802 583 aaPredicted RBP15.74■□□□□ 0.11
VPS35-210ENST00000568784 NGLY1Q96IV0 654 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 PSMD1Q99460 953 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 TACO1Q9BSH4 297 aaKnown RBP15.74■□□□□ 0.11
VPS35-210ENST00000568784 ODF2LQ9ULJ1 636 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 NUP98P52948 1817 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 PARP4Q9UKK3 1724 aaKnown RBP15.74■□□□□ 0.11
VPS35-210ENST00000568784 MMEP08473 750 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 C8orf37Q96NL8 207 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 AZI2Q9H6S1 392 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 NARFQ9UHQ1 456 aa15.74■□□□□ 0.11
VPS35-210ENST00000568784 SPOPO43791 374 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 EVI5O60447 810 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 GRAPQ13588 217 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 GRAPLQ8TC17 118 aaPredicted RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 RUBCNQ92622 972 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 INTS9Q9NV88 658 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 DNAJC12Q9UKB3 198 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 STK38LQ9Y2H1 464 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 ZNF142P52746 1687 aaPredicted RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 DCCP43146 1447 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 MYH3P11055 1940 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 ZBTB5O15062 677 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 CHUKO15111 745 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 CAND2O75155 1236 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 GDF11O95390 407 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 LCA5LO95447 670 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 FGFR4P22455 802 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 HSPA9P38646 679 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 DRAP1Q14919 205 aaPredicted RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 SLC35G2Q8TBE7 412 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 HVCN1Q96D96 273 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 MRRFQ96E11 262 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 SH2D3AQ9BRG2 576 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 RAB17Q9H0T7 212 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 CXorf56Q9H5V9 222 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 CNOT8Q9UFF9 292 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 NR2E1Q9Y466 385 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 SLIT2O94813 1529 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 GSTTP1A0A1W2PQM5 241 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 ZNF543Q08ER8 600 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 ZYXQ15942 572 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 TRAPPC3LQ5T215 181 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 CATSPER3Q86XQ3 398 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 SUGP1Q8IWZ8 645 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 PLCB1Q9NQ66 1216 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 RASAL2Q9UJF2 1139 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 RABGAP1Q9Y3P9 1069 aa15.73■□□□□ 0.11
VPS35-210ENST00000568784 BZW2Q9Y6E2 419 aaKnown RBP15.73■□□□□ 0.11
VPS35-210ENST00000568784 OPLAHO14841 1288 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 SNX1Q13596 522 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 HOOK3Q86VS8 718 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 RIOX1Q9H6W3 641 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 FRMD4BQ9Y2L6 1034 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 CPP00450 1065 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 CLNS1AP54105 237 aaKnown RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 TRIP13Q15645 432 aaPredicted RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 UAP1Q16222 522 aaPredicted RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 SLFN13Q68D06 897 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 TMX4Q9H1E5 349 aaPredicted RBP15.72■□□□□ 0.11
VPS35-210ENST00000568784 ARHGAP4P98171 946 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 TMEM119Q4V9L6 283 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 CCDC197Q8NCU1 140 aa15.72■□□□□ 0.11
VPS35-210ENST00000568784 THOC1Q96FV9 657 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms