RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	ATP9A	O75110	1047 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	PC	P11498	1178 aa	Known RBP	13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	INSRR	P14616	1297 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	MX1	P20591	662 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	PBX3	P40426	434 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	ITIH3	Q06033	890 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	TPRN	Q4KMQ1	711 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	RARS2	Q5T160	578 aa	Known RBP	13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	IQCA1	Q86XH1	822 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	ZDHHC14	Q8IZN3	488 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	TDRD5	Q8NAT2	981 aa	Known RBP	13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	CYP2W1	Q8TAV3	490 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	TRAPPC12	Q8WVT3	735 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	CASP10	Q92851	521 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	PIGS	Q96S52	555 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	HINFP	Q9BQA5	517 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	CELF4	Q9BZC1	486 aa	Known RBP	13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	RNF41	Q9H4P4	317 aa	Predicted RBP	13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	ERAP1	Q9NZ08	941 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	LZTS1	Q9Y250	596 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	MYO10	Q9HD67	2058 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232	ZMYM6	O95789	1325 aa		13.58	□□□□□ -0.24
CLK3-222	ENST00000568232		M0QZ92	97 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	STAM2	O75886	525 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	FGFR1	P11362	822 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	PLCB3	Q01970	1234 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	TMC7	Q7Z402	723 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	SIX5	Q8N196	739 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	RIN2	Q8WYP3	895 aa	Predicted RBP	13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	GLG1	Q92896	1179 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	EVI5L	Q96CN4	794 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	ADAM2	Q99965	735 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	SENP7	Q9BQF6	1050 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	ERVK-5	Q9HDB9	667 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	NGRN	Q9NPE2	291 aa	Known RBP	13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	ZSWIM5	Q9P217	1185 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	PUF60	Q9UHX1	559 aa	Known RBP	13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	MAD2L2	Q9UI95	211 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	FRMPD4	Q14CM0	1322 aa		13.57	□□□□□ -0.24
CLK3-222	ENST00000568232	MYH6	P13533	1939 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	PDE4A	P27815	886 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	MTHFR	P42898	656 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	NMI	Q13287	307 aa	Predicted RBP	13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	CCDC178	Q5BJE1	867 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	LRRC55	Q6ZSA7	311 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	SEPT1	Q8WYJ6	367 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	RTP3	Q9BQQ7	232 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	SEMA4A	Q9H3S1	761 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	CDHR5	Q9HBB8	845 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	PKD2L1	Q9P0L9	805 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	DBR1	Q9UK59	544 aa	Known RBP	13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	GINS2	Q9Y248	185 aa		13.56	□□□□□ -0.24
CLK3-222	ENST00000568232	C2orf71	A6NGG8	1288 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	ZNF213	O14771	459 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	CLASP2	O75122	1294 aa	Known RBP	13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	KCNA2	P16389	499 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	LAG3	P18627	525 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	KRT76	Q01546	638 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	MRPL43	Q8N983	215 aa	Known RBP	13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	PCYT2	Q99447	389 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	SMARCAD1	Q9H4L7	1026 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	RGS18	Q9NS28	235 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	FBXL21	Q9UKT6	434 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	NOC2L	Q9Y3T9	749 aa	Known RBP	13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	SALL3	Q9BXA9	1300 aa		13.55	□□□□□ -0.24
CLK3-222	ENST00000568232	DENND3	A2RUS2	1198 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	RRN3P2	A6NIE6	340 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232		C9IYK1	514 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	STK25	O00506	426 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	EOMES	O95936	686 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	CA8	P35219	290 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	TDG	Q13569	410 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	ATAT1	Q5SQI0	421 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	PCNX4	Q63HM2	1172 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	KIAA1841	Q6NSI8	718 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	KCNT2	Q6UVM3	1135 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	SLC24A5	Q71RS6	500 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	TMEM40	Q8WWA1	233 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	CYP26B1	Q9NR63	512 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	UST	Q9Y2C2	406 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	PCDHA2	Q9Y5H9	948 aa		13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.54	□□□□□ -0.24
CLK3-222	ENST00000568232	PALM3	A6NDB9	673 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	NARS	O43776	548 aa	Known RBP	13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	RPS6KA5	O75582	802 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	RPLP2	P05387	115 aa	Known RBP	13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	EPCAM	P16422	314 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	KRT17	Q04695	432 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	SMC1A	Q14683	1233 aa	Known RBP	13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	PLCB4	Q15147	1175 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	IFIT1B	Q5T764	474 aa	Known RBP	13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	USP17L6P	Q6QN14	398 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	TMC5	Q6UXY8	1006 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	NLRX1	Q86UT6	975 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	PIBF1	Q8WXW3	757 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	RUBCN	Q92622	972 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	ZNF558	Q96NG5	402 aa		13.53	□□□□□ -0.24
CLK3-222	ENST00000568232	CASD1	Q96PB1	797 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms