RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NOA1Q8NC60 698 aaKnown RBP22.27■■□□□ 1.16
CLN3-230ENST00000568076 SLC35C1Q96A29 364 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 BORCS6Q96GS4 357 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 WNK4Q96J92 1243 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 PNKPQ96T60 521 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 JADE2Q9NQC1 790 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 SEL1LQ9UBV2 794 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 LTBP3Q9NS15 1303 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 ANO9A1A5B4 782 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 EPB41P11171 864 aaKnown RBP22.27■■□□□ 1.15
CLN3-230ENST00000568076 EIF2AK2P19525 551 aaKnown RBP22.27■■□□□ 1.15
CLN3-230ENST00000568076 GUCY2CP25092 1073 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 RAPGEF1Q13905 1077 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 COG2Q14746 738 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 DCAF17Q5H9S7 520 aaPredicted RBP22.27■■□□□ 1.15
CLN3-230ENST00000568076 DAW1Q8N136 415 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 NEK9Q8TD19 979 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 METTL14Q9HCE5 456 aaKnown RBP22.27■■□□□ 1.15
CLN3-230ENST00000568076 PLCB1Q9NQ66 1216 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 AIPL1Q9NZN9 384 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 SALL4Q9UJQ4 1053 aa22.27■■□□□ 1.15
CLN3-230ENST00000568076 PJA2O43164 708 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 MOCS3O95396 460 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 PON1P27169 355 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 NFIL3Q16649 462 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 FAM178BQ8IXR5 827 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 FZD1Q9UP38 647 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 PCDHB13Q9Y5F0 798 aa22.26■■□□□ 1.15
CLN3-230ENST00000568076 ARHGEF35A5YM69 484 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 HIP1RO75146 1068 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 MTMR1Q13613 665 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 PGM5Q15124 567 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 ODR4Q5SWX8 454 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 PRAMEF18Q5VWM3 479 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 FAM133AQ8N9E0 248 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 TRIM58Q8NG06 486 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 ZKSCAN4Q969J2 545 aaPredicted RBP22.25■■□□□ 1.15
CLN3-230ENST00000568076 ATG4CQ96DT6 458 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 MMS19Q96T76 1030 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 MAP3K20Q9NYL2 800 aaKnown RBP22.25■■□□□ 1.15
CLN3-230ENST00000568076 ZHX2Q9Y6X8 837 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 ZNF541Q9H0D2 1346 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 UTRNP46939 3433 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 VWA5AO00534 786 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 SASH3O75995 380 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 TBC1D8O95759 1140 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 P4HBP07237 508 aaKnown RBP22.25■■□□□ 1.15
CLN3-230ENST00000568076 TUBB4BP68371 445 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 EXOC3L4Q17RC7 722 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 KLHDC7AQ5VTJ3 777 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 SCYL3Q8IZE3 742 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 STRA6Q9BX79 667 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 ZNF112Q9UJU3 913 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 RAB21Q9UL25 225 aa22.25■■□□□ 1.15
CLN3-230ENST00000568076 DOCK1Q14185 1865 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 ZBED4O75132 1171 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 TACC1O75410 805 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 RHOXF2BP0C7M4 288 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 UCHL3P15374 230 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 USP14P54578 494 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 BACE1P56817 501 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 ARID5AQ03989 594 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 TCERG1LQ5VWI1 586 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 ANKRD13CQ8N6S4 541 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 TRERF1Q96PN7 1200 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 RHOXF2Q9BQY4 288 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 RIPK3Q9Y572 518 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 UBE4BO95155 1302 aa22.24■■□□□ 1.15
CLN3-230ENST00000568076 CCDC151A5D8V7 595 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 ZNF185O15231 689 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PTPRAP18433 802 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PADI6Q6TGC4 694 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 SAMD3Q8N6K7 520 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 CAPZA3Q96KX2 299 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 SGIP1Q9BQI5 828 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 SIX2Q9NPC8 291 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 JRKLQ9Y4A0 524 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PARP14Q460N5 1801 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PPP1R37O75864 691 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PLA2G4AP47712 749 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 BRD3Q15059 726 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 DCAF15Q66K64 600 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 FAM186BQ8IYM0 893 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PDCD2LQ9BRP1 358 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 ARFGAP3Q9NP61 516 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 PRDM10Q9NQV6 1147 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 AGPAT3Q9NRZ7 376 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 DMAC2Q9NW81 257 aa22.23■■□□□ 1.15
CLN3-230ENST00000568076 POTEB2H3BUK9 544 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 ATP9AO75110 1047 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 PSMC2P35998 433 aaKnown RBP22.22■■□□□ 1.15
CLN3-230ENST00000568076 KLHL30Q0D2K2 578 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 ASIC2Q16515 512 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 SLC18A3Q16572 532 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 ANGEL2Q5VTE6 544 aaKnown RBP22.22■■□□□ 1.15
CLN3-230ENST00000568076 RNF207Q6ZRF8 634 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 IRF2BP2Q7Z5L9 587 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 WRNIP1Q96S55 665 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 RMDN3Q96TC7 470 aa22.22■■□□□ 1.15
CLN3-230ENST00000568076 PXMP2Q9NR77 195 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms