RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZCWPW2Q504Y3 356 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 FAM83BQ5T0W9 1011 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 ICE2Q659A1 982 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 TSEN2Q8NCE0 465 aaKnown RBP14.51□□□□□ -0.09
VPS4A-204ENST00000566354 BCAS4Q8TDM0 211 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 GDF3Q9NR23 364 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 EHD2Q9NZN4 543 aa14.51□□□□□ -0.09
VPS4A-204ENST00000566354 POTEMA6NI47 508 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 TDP2O95551 362 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 GNA14O95837 355 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 CPP00450 1065 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 POTEIP0CG38 1075 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 POTEJP0CG39 1038 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 GUCY2CP25092 1073 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 GNGT1P63211 74 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 MRPS25P82663 173 aaKnown RBP14.5□□□□□ -0.09
VPS4A-204ENST00000566354 LRRC41Q15345 812 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 NAB2Q15742 525 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 CCDC40Q4G0X9 1142 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 GPATCH4Q5T3I0 446 aaKnown RBP14.5□□□□□ -0.09
VPS4A-204ENST00000566354 PPP4R3AQ6IN85 833 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 PACS2Q86VP3 889 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 DCAF4Q8WV16 495 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 CEP63Q96MT8 703 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 ZNF112Q9UJU3 913 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 GRIN2DO15399 1336 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 GRID2IPA4D2P6 1211 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 IQCA1LA6NCM1 817 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 ANKRD65E5RJM6 399 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 TRAF5O00463 557 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 EDIL3O43854 480 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 NOL4O94818 638 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 PAK2Q13177 524 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 ZKSCAN8Q15776 578 aaPredicted RBP14.5□□□□□ -0.09
VPS4A-204ENST00000566354 SKIDA1Q1XH10 827 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 SUPT20HL1Q3ZLR7 823 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 TADA2BQ86TJ2 420 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 ADGRF4Q8IZF3 695 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 KLRG1Q96E93 195 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 HOOK2Q96ED9 719 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 NUDT12Q9BQG2 462 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 NLRC4Q9NPP4 1024 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 BMP2KQ9NSY1 1161 aaPredicted RBP14.5□□□□□ -0.09
VPS4A-204ENST00000566354 WDR90Q96KV7 1748 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 DOCK1Q14185 1865 aa14.5□□□□□ -0.09
VPS4A-204ENST00000566354 MAFGO15525 162 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 TLR2O60603 784 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 COASYQ13057 564 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 TTMPQ5BVD1 217 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 KCNK18Q7Z418 384 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 IQCKQ8N0W5 287 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 ARL8AQ96BM9 186 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 DNAJC19Q96DA6 116 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 GMCL1Q96IK5 515 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 MS4A14Q96JA4 679 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 ZIM3Q96PE6 472 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 JMJD4Q9H9V9 463 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 USP17L10C9JJH3 530 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 PALMO75781 387 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 GLI1P08151 1106 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 ERCC3P19447 782 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 DGKZQ13574 1117 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 SLC18A3Q16572 532 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 MREGQ8N565 214 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 GLIS3Q8NEA6 775 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 ZC3H15Q8WU90 426 aaKnown RBP14.49□□□□□ -0.09
VPS4A-204ENST00000566354 COA7Q96BR5 231 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 PANK4Q9NVE7 773 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 PCDHGC5Q9Y5F6 944 aa14.49□□□□□ -0.09
VPS4A-204ENST00000566354 USP2O75604 605 aaPredicted RBP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 BMP3P12645 472 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 MARSP56192 900 aaKnown RBP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 POLR2FP61218 127 aaKnown RBP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 FAM26FQ5R3K3 315 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 CFAP58Q5T655 872 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 GPIHBP1Q8IV16 184 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 SCYL3Q8IZE3 742 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 SYNPO2Q9UMS6 1093 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 FAM169AQ9Y6X4 670 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 HEXIM1O94992 359 aaKnown RBP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 CARSP49589 748 aaKnown RBP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 MEI1Q5TIA1 1274 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 PPP1R18Q6NYC8 613 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 TBC1D5Q92609 795 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 LSM14BQ9BX40 385 aaKnown RBP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 NT5C3AQ9H0P0 336 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 VCPKMTQ9H867 229 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 EPB41L5Q9HCM4 733 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 GOPCQ9HD26 462 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 AIPL1Q9NZN9 384 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 NFU1Q9UMS0 254 aa14.48□□□□□ -0.09
VPS4A-204ENST00000566354 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.48□□□□□ -0.09
VPS4A-204ENST00000566354 KLRC1P26715 233 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 GUCY2DQ02846 1103 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 EMC10Q5UCC4 262 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 TRIM59Q8IWR1 403 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 CD302Q8IX05 232 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.47□□□□□ -0.09
VPS4A-204ENST00000566354 CDCA5Q96FF9 252 aa14.47□□□□□ -0.09
VPS4A-204ENST00000566354 PPP1R11O60927 126 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms