RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 FNDC1Q4ZHG4 1894 aaPredicted RBP12.25□□□□□ -0.45
VPS39-208ENST00000564994 CYP3A7-CYP3A51PA0A087WV96 503 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 M0QZ92 97 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 ZNF862O60290 1169 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 PFKFB2O60825 505 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 CTDNEP1O95476 244 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 PSAPP07602 524 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 BMP1P13497 986 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 CYP3A7P24462 503 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 KCNQ1P51787 676 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 ANAPC15P60006 121 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 UGCGQ16739 394 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 TMEM266Q2M3C6 531 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 Q4G0T1 1027 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 CPLX2Q6PUV4 134 aaKnown RBP12.25□□□□□ -0.45
VPS39-208ENST00000564994 CKAP2LQ8IYA6 745 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 CRIPAKQ8N1N5 446 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 ADAMTS19Q8TE59 1207 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 TMEM40Q8WWA1 233 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 ZNF689Q96CS4 500 aaPredicted RBP12.25□□□□□ -0.45
VPS39-208ENST00000564994 IL17RAQ96F46 866 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 SAMD11Q96NU1 681 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 TMX1Q9H3N1 280 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 UNC45AQ9H3U1 944 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 SAMM50Q9Y512 469 aa12.25□□□□□ -0.45
VPS39-208ENST00000564994 WDR64B1ANS9 1081 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 H3BNC9 293 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 CHMP2AO43633 222 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 GAS7O60861 476 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 PSMD10O75832 226 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 DGKIO75912 1065 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 AK2P54819 239 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 PAK2Q13177 524 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 LRCH2Q5VUJ6 765 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 B3GNT9Q6UX72 402 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 ADGRA3Q8IWK6 1321 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 TMEM192Q8IY95 271 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 FIBCD1Q8N539 461 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 MBOAT7Q96N66 472 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 PPP1R16BQ96T49 567 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 RIT2Q99578 217 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 PHF20Q9BVI0 1012 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 FTHL17Q9BXU8 183 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 C22orf23Q9BZE7 217 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 SLKQ9H2G2 1235 aaPredicted RBP12.24□□□□□ -0.45
VPS39-208ENST00000564994 ERVK-5Q9HDB9 667 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 DISC1Q9NRI5 854 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 TCEAL9Q9UHQ7 104 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 COG5Q9UP83 839 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 GINS2Q9Y248 185 aa12.24□□□□□ -0.45
VPS39-208ENST00000564994 NOC2LQ9Y3T9 749 aaKnown RBP12.24□□□□□ -0.45
VPS39-208ENST00000564994 STK36Q9NRP7 1315 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 MGEA5O60502 916 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 GPR32O75388 356 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 LARGE1O95461 756 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 SEC24BO95487 1268 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 VTNP04004 478 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 OATP04181 439 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 CLCN3P51790 818 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 GPM6BQ13491 265 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 INF2Q27J81 1249 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 KIZQ2M2Z5 673 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 GALNT17Q6IS24 598 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 FAM177A1Q8N128 213 aaPredicted RBP12.23□□□□□ -0.45
VPS39-208ENST00000564994 LINC01465Q8N7H1 131 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 ETNPPLQ8TBG4 499 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 HLA-CQ95604 372 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 NECAB3Q96P71 396 aaPredicted RBP12.23□□□□□ -0.45
VPS39-208ENST00000564994 TEKT3Q9BXF9 490 aa12.23□□□□□ -0.45
VPS39-208ENST00000564994 C5orf67F2Z3F1 127 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 TNFRSF10AO00220 468 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 SLC37A4O43826 429 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 RPS6KA5O75582 802 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 CDKL5O76039 1030 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 STBD1O95210 358 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 FDPSP14324 419 aaKnown RBP12.22□□□□□ -0.45
VPS39-208ENST00000564994 SFNP31947 248 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 JAK3P52333 1124 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 PRKCEQ02156 737 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 NFX1Q12986 1120 aaKnown RBP12.22□□□□□ -0.45
VPS39-208ENST00000564994 BTG3Q14201 252 aaPredicted RBP12.22□□□□□ -0.45
VPS39-208ENST00000564994 NONOQ15233 471 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS39-208ENST00000564994 ME3Q16798 604 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 AAK1Q2M2I8 961 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 MOXD1Q6UVY6 613 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 NPAS4Q8IUM7 802 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 METTL13Q8N6R0 699 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 NECAB1Q8N987 351 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 OXER1Q8TDS5 423 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 CLP1Q92989 425 aaKnown RBP12.22□□□□□ -0.45
VPS39-208ENST00000564994 MRPL38Q96DV4 380 aaKnown RBP12.22□□□□□ -0.45
VPS39-208ENST00000564994 FAM167AQ96KS9 214 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 UHRF1Q96T88 793 aaPredicted RBP12.22□□□□□ -0.45
VPS39-208ENST00000564994 OSMRQ99650 979 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 ST3GAL5Q9UNP4 418 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 CEP131Q9UPN4 1083 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 PLXNA4Q9HCM2 1894 aa12.22□□□□□ -0.45
VPS39-208ENST00000564994 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 TMEM150BA6NC51 233 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 GRM6O15303 877 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms