RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 OLFML2BQ68BL8 750 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 GALNT18Q6P9A2 607 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 NT5DC4Q86YG4 428 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 PANK1Q8TE04 598 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 FCRL2Q96LA5 508 aaPredicted RBP6.74□□□□□ -1.33
VPS35-204ENST00000563884 SPATA32Q96LK8 384 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 SLC9A7Q96T83 725 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 P2RX7Q99572 595 aaKnown RBP6.74□□□□□ -1.33
VPS35-204ENST00000563884 GDF15Q99988 308 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 PLCD4Q9BRC7 762 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 TNFRSF10DQ9UBN6 386 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 FBXL21Q9UKT6 434 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 ATP6V0A2Q9Y487 856 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 TAF6LQ9Y6J9 622 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 SCN9AQ15858 1988 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 FAM205AQ6ZU69 1335 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 ZSWIM8A7E2V4 1837 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 EYSQ5T1H1 3165 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 SHTN1A0MZ66 631 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 GJB1P08034 283 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 ACRP10323 421 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 ARL4AP40617 200 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 PAK2Q13177 524 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 UBE2Q1Q7Z7E8 422 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 TMEM192Q8IY95 271 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 GUCD1Q96NT3 240 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 KCNC2Q96PR1 638 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 CDADC1Q9BWV3 514 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 CNTD2Q9H8S5 307 aa6.73□□□□□ -1.33
VPS35-204ENST00000563884 COL1A1P02452 1464 aaPredicted RBP6.73□□□□□ -1.33
VPS35-204ENST00000563884 ABCC12Q96J65 1359 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 OTOFQ9HC10 1997 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 PSMD14O00487 310 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 ABLIM1O14639 778 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 N4BP3O15049 544 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 TRIM13O60858 407 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 MPOP05164 745 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 ENDOUP21128 410 aaKnown RBP6.72□□□□□ -1.33
VPS35-204ENST00000563884 SOX9P48436 509 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 AFF3P51826 1226 aaKnown RBP6.72□□□□□ -1.33
VPS35-204ENST00000563884 UBXN2AP68543 259 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 CRHR2Q13324 411 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 SH3TC2Q8TF17 1288 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 TM9SF2Q99805 663 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 CARD11Q9BXL7 1154 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 GFOD1Q9NXC2 390 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.72□□□□□ -1.33
VPS35-204ENST00000563884 GPR55Q9Y2T6 319 aaPredicted RBP6.72□□□□□ -1.33
VPS35-204ENST00000563884 PCDHB12Q9Y5F1 795 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 DUOX1Q9NRD9 1551 aa6.72□□□□□ -1.33
VPS35-204ENST00000563884 COL2A1P02458 1487 aaPredicted RBP6.72□□□□□ -1.33
VPS35-204ENST00000563884 A0A0G2JLL6 359 aaPredicted RBP6.71□□□□□ -1.34
VPS35-204ENST00000563884 FADS2P1A8MWK0 482 aa6.71□□□□□ -1.34
VPS35-204ENST00000563884 TCERG1O14776 1098 aaKnown RBP6.71□□□□□ -1.34
VPS35-204ENST00000563884 RNMTO43148 476 aaKnown RBP6.71□□□□□ -1.34
VPS35-204ENST00000563884 TNNT2P45379 298 aaPredicted RBP6.71□□□□□ -1.34
VPS35-204ENST00000563884 ERVFRD-1P60508 538 aa6.71□□□□□ -1.34
VPS35-204ENST00000563884 YBX1P67809 324 aaKnown RBP6.71□□□□□ -1.34
VPS35-204ENST00000563884 KIR3DS1Q14943 382 aa6.71□□□□□ -1.34
VPS35-204ENST00000563884 HSF5Q4G112 596 aaPredicted RBP6.71□□□□□ -1.34
VPS35-204ENST00000563884 SLC6A18Q96N87 628 aa6.71□□□□□ -1.34
VPS35-204ENST00000563884 DDX60LQ5H9U9 1706 aaKnown RBP6.7□□□□□ -1.34
VPS35-204ENST00000563884 YDJCA8MPS7 323 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 SASH1O94885 1247 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 PRKCAP17252 672 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 LAPTM5Q13571 262 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 RAB3GAP1Q15042 981 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 LCE5AQ5TCM9 118 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 MOB2Q70IA6 237 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 SP8Q8IXZ3 490 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 NUP43Q8NFH3 380 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 MZB1Q8WU39 189 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 DACT3Q96B18 629 aaPredicted RBP6.7□□□□□ -1.34
VPS35-204ENST00000563884 GPRASP2Q96D09 838 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 DHRS1Q96LJ7 313 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 TGIF2Q9GZN2 237 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 GINM1Q9NU53 330 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 PPT2Q9UMR5 302 aa6.7□□□□□ -1.34
VPS35-204ENST00000563884 FOXD2O60548 495 aaPredicted RBP6.69□□□□□ -1.34
VPS35-204ENST00000563884 BBOX1O75936 387 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 FOSL2P15408 326 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 HOXD10P28358 340 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 CDR1P51861 262 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 CYP4F8P98187 520 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 TMEM62Q0P6H9 643 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 VMACQ2NL98 169 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 TMC6Q7Z403 805 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 WNK4Q96J92 1243 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 FERD3LQ96RJ6 166 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 EYA3Q99504 573 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 ERVK13-1Q9NX77 482 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 PRR13Q9NZ81 148 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 KLHL14Q9P2G3 628 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 SUCOQ9UBS9 1254 aaKnown RBP6.69□□□□□ -1.34
VPS35-204ENST00000563884 POLKQ9UBT6 870 aa6.69□□□□□ -1.34
VPS35-204ENST00000563884 A0A1W2PQ45 241 aaPredicted RBP6.68□□□□□ -1.34
VPS35-204ENST00000563884 A0A1W2PQY0 241 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 FAM86C2PA6NEL3 165 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 NUDT19A8MXV4 375 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 ZNF205O95201 554 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms