RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TNRC6CQ9HCJ0 1690 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 C6orf229H3BNL8 230 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 DDX3XO00571 662 aaKnown RBP eCLIP14.4□□□□□ -0.13e-8■■■□□ 15.1
CLN3-210ENST00000563874 H2AFZP0C0S5 128 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 ABCB4P21439 1286 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 IBSPP21815 317 aaPredicted RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 MAGOHP61326 146 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 GABPAQ06546 454 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 SLC30A10Q6XR72 485 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 H2AFVQ71UI9 128 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 SPATS2Q86XZ4 545 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 CCDC13Q8IYE1 715 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 MAGOHBQ96A72 148 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 CEP89Q96ST8 783 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 MXD3Q9BW11 206 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 CD248Q9HCU0 757 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 DDX20Q9UHI6 824 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 GMNCA6NCL1 334 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 FAM196BA6NMK8 535 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 RIMBP2O15034 1052 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 FGGP02679 453 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 ZBTB48P10074 688 aaPredicted RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 HSPA1LP34931 641 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 EPHA7Q15375 998 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 IFI16Q16666 785 aaKnown RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 QRICH1Q2TAL8 776 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 KRT71Q3SY84 523 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 CHADLQ6NUI6 762 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 LRIG3Q6UXM1 1119 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 ARFGAP2Q8N6H7 521 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 P2RX7Q99572 595 aaKnown RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 ANO3Q9BYT9 981 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 KCNMB3Q9NPA1 279 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 POLLQ9UGP5 575 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 ATF5Q9Y2D1 282 aaPredicted RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 SBF2Q86WG5 1849 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 BTNL10A8MVZ5 291 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 GCNT3O95395 438 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 C10orf76Q5T2E6 689 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 PPP1R18Q6NYC8 613 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 PPP4R3CPQ6ZMV5 832 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 FRMD5Q7Z6J6 570 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 GLYCTKQ8IVS8 523 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 ZC3H3Q8IXZ2 948 aaKnown RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 JPH2Q9BR39 696 aaPredicted RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 SERPINB13Q9UIV8 391 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 ATP8A1Q9Y2Q0 1164 aa14.39□□□□□ -0.11
CLN3-210ENST00000563874 BZW2Q9Y6E2 419 aaKnown RBP14.39□□□□□ -0.11
CLN3-210ENST00000563874 IGKV6D-41A0A0C4DH26 115 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 FRMD3A2A2Y4 597 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 NR3C1P04150 777 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 IL1R1P14778 569 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 TMC3Q7Z5M5 1100 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 MDM1Q8TC05 714 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 SLC35C1Q96A29 364 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 SIX2Q9NPC8 291 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 ATXN2Q99700 1313 aaKnown RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 CDK5RAP2Q96SN8 1893 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 PHF20L1A8MW92 1017 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 CES2O00748 559 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 GAKO14976 1311 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 POLD1P28340 1107 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 HOXA7P31268 230 aaPredicted RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 USP8P40818 1118 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 SCNN1DP51172 638 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 GALCP54803 685 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 ACTN3Q08043 901 aaPredicted RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 SWT1Q5T5J6 900 aaKnown RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 CCDC121Q6ZUS5 278 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 NT5DC3Q86UY8 548 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 C1orf131Q8NDD1 294 aaKnown RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 ZNF526Q8TF50 670 aaPredicted RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 CALR3Q96L12 384 aaKnown RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 BHMT2Q9H2M3 363 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 DNM3Q9UQ16 869 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 TRAF3IP3Q9Y228 551 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 TRAPPC3O43617 180 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 BUB1BO60566 1050 aaPredicted RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 PPP2R2AP63151 447 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 IFFO1Q0D2I5 559 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 ZNF211Q13398 564 aaPredicted RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 RUFY4Q6ZNE9 571 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 YTHDF3Q7Z739 585 aaKnown RBP14.38□□□□□ -0.11
CLN3-210ENST00000563874 KSR1Q8IVT5 923 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 PAGR1Q9BTK6 254 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 VCPKMTQ9H867 229 aa14.38□□□□□ -0.11
CLN3-210ENST00000563874 ASTN1O14525 1302 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 LOC102724159A0A0B4J2E5 919 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 SPATA31C1P0DKV0 1188 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 SHMT1P34896 483 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 PWP2Q15269 919 aaKnown RBP14.37□□□□□ -0.11
CLN3-210ENST00000563874 C6orf89Q6UWU4 347 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 VPS36Q86VN1 386 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 SLF2Q8IX21 1173 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 RAPGEF5Q92565 580 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 FAM163AQ96GL9 167 aaPredicted RBP14.37□□□□□ -0.11
CLN3-210ENST00000563874 CCDC114Q96M63 670 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 RUSC1Q9BVN2 902 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 GOPCQ9HD26 462 aa14.37□□□□□ -0.11
CLN3-210ENST00000563874 SEPT11Q9NVA2 429 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms