RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MTMR6Q9Y217 621 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 FAM50BQ9Y247 325 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 PCDHA8Q9Y5H6 950 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 SQORQ9Y6N5 450 aa15.88■□□□□ 0.13
LDLR-213ENST00000560502 PLXNA4Q9HCM2 1894 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 RRN3P2A6NIE6 340 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 JAK2O60674 1132 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 MMP1P03956 469 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 INSRRP14616 1297 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 IFNAR1P17181 557 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 CAMK1Q14012 370 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 BTG3Q14201 252 aaPredicted RBP15.87■□□□□ 0.13
LDLR-213ENST00000560502 RTN4RL1Q86UN2 441 aaPredicted RBP15.87■□□□□ 0.13
LDLR-213ENST00000560502 RAB11FIP4Q86YS3 637 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 ADHFE1Q8IWW8 467 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 PLVAPQ9BX97 442 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 NFASCO94856 1347 aa15.87■□□□□ 0.13
LDLR-213ENST00000560502 FNDC1Q4ZHG4 1894 aaPredicted RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 DCXO43602 365 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 TBX10O75333 385 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 CD52P31358 61 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 IGBP1P78318 339 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 DLX2Q07687 328 aaPredicted RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 SMAD2Q15796 467 aaKnown RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 CSPP1Q1MSJ5 1256 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 TYW1BQ6NUM6 668 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 EP400NLQ6ZTU2 488 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 TEX2Q8IWB9 1127 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 TRIM22Q8IYM9 498 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 CMTR2Q8IYT2 770 aaKnown RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 FANCBQ8NB91 859 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 P2RX5Q93086 422 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 MXRA8Q9BRK3 442 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 FAM49AQ9H0Q0 323 aaPredicted RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 ZSCAN16Q9H4T2 348 aaPredicted RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 KCNH7Q9NS40 1196 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 ORC3Q9UBD5 711 aaPredicted RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 SLC9A2Q9UBY0 812 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 TRPV2Q9Y5S1 764 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 MRPL42Q9Y6G3 142 aaKnown RBP15.86■□□□□ 0.13
LDLR-213ENST00000560502 CNTNAP5Q8WYK1 1306 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 IGSF9BQ9UPX0 1349 aa15.86■□□□□ 0.13
LDLR-213ENST00000560502 VPS37CA5D8V6 355 aaPredicted RBP15.85■□□□□ 0.13
LDLR-213ENST00000560502 H3BQV1 296 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 ACTR2P61160 394 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 PLCB4Q15147 1175 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 NTRK3Q16288 839 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 IER5Q5VY09 327 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 WWC2Q6AWC2 1192 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 HEATR3Q7Z4Q2 680 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 NPAS4Q8IUM7 802 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 CYP2W1Q8TAV3 490 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 FTHL17Q9BXU8 183 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 PLAGL2Q9UPG8 496 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 PCDHA2Q9Y5H9 948 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 KDM3AQ9Y4C1 1321 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 EVPLQ92817 2033 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 TECTAO75443 2155 aa15.85■□□□□ 0.13
LDLR-213ENST00000560502 MBTPS2O43462 519 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 GTF2F1P35269 517 aaKnown RBP eCLIP15.84■□□□□ 0.132e-14■□□□□ 9.4
LDLR-213ENST00000560502 IRS1P35568 1242 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 FUT2Q10981 343 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 ITGB3BPQ13352 177 aaPredicted RBP15.84■□□□□ 0.13
LDLR-213ENST00000560502 NBR1Q14596 966 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 SKOR2Q2VWA4 1001 aaPredicted RBP15.84■□□□□ 0.13
LDLR-213ENST00000560502 PPP1R18Q6NYC8 613 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 PLPPR4Q7Z2D5 763 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 CCDC82Q8N4S0 544 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 TRAPPC12Q8WVT3 735 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 RNF26Q9BY78 433 aaPredicted RBP15.84■□□□□ 0.13
LDLR-213ENST00000560502 AZI2Q9H6S1 392 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 RIC8AQ9NPQ8 531 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 FAM217BQ9NTX9 383 aaPredicted RBP15.84■□□□□ 0.13
LDLR-213ENST00000560502 PADI3Q9ULW8 664 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 TRPC6Q9Y210 931 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 WDR81Q562E7 1941 aa15.84■□□□□ 0.13
LDLR-213ENST00000560502 IGKV6D-21A0A0A0MT36 114 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 SMIM35A0A1B0GVV1 85 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 LINC01565O15544 149 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 ATG7O95352 703 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 ITGB1P05556 798 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 ARP10275 920 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 DNAJB1P25685 340 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 CDC27P30260 824 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 SSRP1Q08945 709 aaKnown RBP15.83■□□□□ 0.12
LDLR-213ENST00000560502 TMEM62Q0P6H9 643 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 ADAM15Q13444 863 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 SMAD4Q13485 552 aaKnown RBP15.83■□□□□ 0.12
LDLR-213ENST00000560502 CLUL1Q15846 466 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 NAALADL2Q58DX5 795 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 ATL3Q6DD88 541 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 SDF4Q9BRK5 362 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 CELF4Q9BZC1 486 aaKnown RBP15.83■□□□□ 0.12
LDLR-213ENST00000560502 TMX1Q9H3N1 280 aa15.83■□□□□ 0.12
LDLR-213ENST00000560502 AGO4Q9HCK5 861 aaKnown RBP15.83■□□□□ 0.12
LDLR-213ENST00000560502 ALG13Q9NP73 1137 aaKnown RBP15.83■□□□□ 0.12
LDLR-213ENST00000560502 MYH9P35579 1960 aaKnown RBP15.83■□□□□ 0.12
LDLR-213ENST00000560502 M0QZ92 97 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 MEIS1O00470 390 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 DEXIO95424 95 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms