RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MYO3BQ8WXR4 1341 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 DDX3XO00571 662 aaKnown RBP eCLIP14.09□□□□□ -0.158e-9■□□□□ 10
LDLR-207ENST00000558013 SREBF1P36956 1147 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 SYDE2Q5VT97 1194 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 RINT1Q6NUQ1 792 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 TRMT1LQ7Z2T5 733 aaKnown RBP14.09□□□□□ -0.15
LDLR-207ENST00000558013 FRMD5Q7Z6J6 570 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 COL23A1Q86Y22 540 aaPredicted RBP14.09□□□□□ -0.15
LDLR-207ENST00000558013 METTL13Q8N6R0 699 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 NEUROG2Q9H2A3 272 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 RABGAP1Q9Y3P9 1069 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 ZEB2O60315 1214 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 KIF4AO95239 1232 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 TRIM49P0CI25 452 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 TRIM49CP0CI26 452 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 FLT3P36888 993 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 GUCY1A3Q02108 690 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 Q4G0T1 1027 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 MAEAQ7L5Y9 396 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 ADAT2Q7Z6V5 191 aaKnown RBP14.09□□□□□ -0.15
LDLR-207ENST00000558013 MYCT1Q8N699 235 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 ACER1Q8TDN7 264 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 U2AF1L4Q8WU68 220 aaKnown RBP14.09□□□□□ -0.15
LDLR-207ENST00000558013 DYDC2Q96IM9 177 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.09□□□□□ -0.152e-6■■■■■ 72.5
LDLR-207ENST00000558013 NR2E1Q9Y466 385 aa14.09□□□□□ -0.15
LDLR-207ENST00000558013 PDXKO00764 312 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 COPB2P35606 906 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 PPFIA1Q13136 1202 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 AP3B2Q13367 1082 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 HLTFQ14527 1009 aaKnown RBP eCLIP14.08□□□□□ -0.15
LDLR-207ENST00000558013 ZYXQ15942 572 aaKnown RBP14.08□□□□□ -0.15
LDLR-207ENST00000558013 CFAP58Q5T655 872 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 NAA35Q5VZE5 725 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 TATDN1Q6P1N9 297 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 CCDC174Q6PII3 467 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 GLYCTKQ8IVS8 523 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 ERMNQ8TAM6 284 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 SH2D3AQ9BRG2 576 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 CENPHQ9H3R5 247 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 LUC7LQ9NQ29 371 aaKnown RBP14.08□□□□□ -0.15
LDLR-207ENST00000558013 TSKSQ9UJT2 592 aa14.08□□□□□ -0.15
LDLR-207ENST00000558013 TBCAO75347 108 aaKnown RBP14.08□□□□□ -0.16
LDLR-207ENST00000558013 SLITRK3O94933 977 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 MMP10P09238 476 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 ABCB4P21439 1286 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 PALB2Q86YC2 1186 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 BANK1Q8NDB2 785 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 LRRC4CQ9HCJ2 640 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 CHORDC1Q9UHD1 332 aaPredicted RBP14.08□□□□□ -0.16
LDLR-207ENST00000558013 PRR12Q9ULL5 1215 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 ZMYM2Q9UBW7 1377 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 IGLV3-22A0A075B6J6 115 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 TISP43B9A030 160 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 BMP3P12645 472 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 NPR1P16066 1061 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 ECHS1P30084 290 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 CYP2J2P51589 502 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 CBWD6Q4V339 395 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 CBWD3Q5JTY5 395 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 CBWD5Q5RIA9 395 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 DACT2Q5SW24 774 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 PPP4R3CPQ6ZMV5 832 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 TPCN2Q8NHX9 752 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 TAF4BQ92750 862 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 PRMT6Q96LA8 375 aaPredicted RBP14.08□□□□□ -0.16
LDLR-207ENST00000558013 RNPC3Q96LT9 517 aaKnown RBP14.08□□□□□ -0.16
LDLR-207ENST00000558013 CELF4Q9BZC1 486 aaKnown RBP14.08□□□□□ -0.16
LDLR-207ENST00000558013 TYW1Q9NV66 732 aaKnown RBP14.08□□□□□ -0.16
LDLR-207ENST00000558013 PKD2L1Q9P0L9 805 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 AMACRQ9UHK6 382 aa14.08□□□□□ -0.16
LDLR-207ENST00000558013 GOLGA8KD6RF30 607 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 ZBTB48P10074 688 aaPredicted RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 ALS2CLQ60I27 953 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 ARHGAP27Q6ZUM4 889 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 CDAN1Q8IWY9 1227 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 OLIG1Q8TAK6 271 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 LNX1Q8TBB1 728 aaPredicted RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 BBXQ8WY36 941 aaPredicted RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 NAP1L4Q99733 375 aaKnown RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 PLCB1Q9NQ66 1216 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 TMEM59LQ9UK28 342 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 IGSF9BQ9UPX0 1349 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 PCNTO95613 3336 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 EIF3HO15372 352 aaKnown RBP eCLIP14.07□□□□□ -0.16
LDLR-207ENST00000558013 SART1O43290 800 aaKnown RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 CALUO43852 315 aaPredicted RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 OPA1O60313 960 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 ECE2O60344 883 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 PAK2Q13177 524 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 TBC1D10BQ4KMP7 808 aaPredicted RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 GLE1Q53GS7 698 aaKnown RBP14.07□□□□□ -0.16
LDLR-207ENST00000558013 GBP6Q6ZN66 633 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 TMEM179Q6ZVK1 233 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 DAAM2Q86T65 1068 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 HSD17B14Q9BPX1 270 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 TAS2R14Q9NYV8 317 aa14.07□□□□□ -0.16
LDLR-207ENST00000558013 SIPA1L1O43166 1804 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 EVI5O60447 810 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 EPB41P11171 864 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms