RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MAEAQ7L5Y9 396 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 FAM228AQ86W67 206 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 SFR1Q86XK3 245 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 TRIM59Q8IWR1 403 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 CEP89Q96ST8 783 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 VCPKMTQ9H867 229 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 ACP6Q9NPH0 428 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 GEMIN8Q9NWZ8 242 aaKnown RBP13.46□□□□□ -0.26
LDLR-205ENST00000557933 TAS2R14Q9NYV8 317 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 TNRC6CQ9HCJ0 1690 aaKnown RBP13.45□□□□□ -0.26
LDLR-205ENST00000557933 H0YGN5 161 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 CHMP2AO43633 222 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 AKAP3O75969 853 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 UPP2O95045 317 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 IFI35P80217 286 aaPredicted RBP13.45□□□□□ -0.26
LDLR-205ENST00000557933 ITIH3Q06033 890 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 COG2Q14746 738 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 PRR16Q569H4 304 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 ZNF746Q6NUN9 644 aaPredicted RBP13.45□□□□□ -0.26
LDLR-205ENST00000557933 RNF10Q8N5U6 811 aaKnown RBP13.45□□□□□ -0.26
LDLR-205ENST00000557933 CYP2W1Q8TAV3 490 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 PIGOQ8TEQ8 1089 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 THOC1Q96FV9 657 aaKnown RBP13.45□□□□□ -0.26
LDLR-205ENST00000557933 PPP1R9AQ9ULJ8 1098 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 NFS1Q9Y697 457 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 BAG3O95817 575 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 CLTAP09496 248 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 PPP1R7Q15435 360 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 ACCSLQ4AC99 568 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 HIBCHQ6NVY1 386 aaPredicted RBP13.45□□□□□ -0.26
LDLR-205ENST00000557933 CYB5D1Q6P9G0 228 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 IRF2BP2Q7Z5L9 587 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 ADGRF4Q8IZF3 695 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 GIMAP7Q8NHV1 300 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 SH2D3AQ9BRG2 576 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 ISCUQ9H1K1 167 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 GANQ9H2C0 597 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 SLC12A6Q9UHW9 1150 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 L3MBTL1Q9Y468 752 aa13.45□□□□□ -0.26
LDLR-205ENST00000557933 PVALEFA0A1B0GWK0 134 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 HMGB1P1B2RPK0 211 aaPredicted RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 PGRMC1O00264 195 aaKnown RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 ATMINO43313 823 aaPredicted RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 FSBPO95073 299 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 FGFR1OPO95684 399 aaKnown RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 TRIM49P0CI25 452 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 TRIM49CP0CI26 452 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 FGFR4P22455 802 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 HSPA9P38646 679 aaKnown RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 MARCKSL1P49006 195 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 SCNN1DP51172 638 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 UBXN2AP68543 259 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 BYSLQ13895 437 aaKnown RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 EXOC3L4Q17RC7 722 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 ZC2HC1CQ53FD0 456 aaPredicted RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 WHAMMQ8TF30 809 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 SPZ1Q9BXG8 430 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 GCNT4Q9P109 453 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 TPX2Q9ULW0 747 aaKnown RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 ARSHQ5FYA8 562 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 MFSD14BQ5SR56 506 aa13.44□□□□□ -0.26
LDLR-205ENST00000557933 TBC1D1Q86TI0 1168 aaPredicted RBP13.44□□□□□ -0.26
LDLR-205ENST00000557933 CYP11B2P19099 503 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 PON1P27169 355 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 PPP2R2AP63151 447 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 GLE1Q53GS7 698 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 MICALCLQ6ZW33 695 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 CCDC125Q86Z20 511 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 TPCN2Q8NHX9 752 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 ARHGEF26Q96DR7 871 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 ADAM33Q9BZ11 813 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 JMJD4Q9H9V9 463 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 RGL1Q9NZL6 768 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 STK17AQ9UEE5 414 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 ARMCX3Q9UH62 379 aaPredicted RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 MYH1P12882 1939 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 MYH4Q9Y623 1939 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 DDX3XO00571 662 aaKnown RBP eCLIP13.43□□□□□ -0.268e-9■□□□□ 10
LDLR-205ENST00000557933 CETN3O15182 167 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 GCNT3O95395 438 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 HOXA13P31271 388 aaPredicted RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 USP8P40818 1118 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 SCTRP47872 440 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 USP11P51784 963 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 TMC3Q7Z5M5 1100 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 PHLDB2Q86SQ0 1253 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 CACNA2D3Q8IZS8 1091 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 FUKQ8N0W3 1084 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 KIF2BQ8N4N8 673 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 ELAC2Q9BQ52 826 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 RTFDC1Q9BY42 306 aaPredicted RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 MAGEF1Q9HAY2 307 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 SLC24A3Q9HC58 644 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 DBR1Q9UK59 544 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 TRAPPC3O43617 180 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 UFL1O94874 794 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 VIMP08670 466 aaKnown RBP13.43□□□□□ -0.26
LDLR-205ENST00000557933 CHN1P15882 459 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 CREB1P16220 341 aa13.43□□□□□ -0.26
LDLR-205ENST00000557933 KCNJ1P48048 391 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms