RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PDXKO00764 312 aa17.77■□□□□ 0.44
SHMT2-232ENST00000557487 CHUKO15111 745 aa17.77■□□□□ 0.44
SHMT2-232ENST00000557487 RPL13P26373 211 aaKnown RBP17.77■□□□□ 0.44
SHMT2-232ENST00000557487 RHBDL3P58872 404 aa17.77■□□□□ 0.44
SHMT2-232ENST00000557487 HDLBPQ00341 1268 aaKnown RBP17.77■□□□□ 0.44
SHMT2-232ENST00000557487 RNF187Q5TA31 235 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-232ENST00000557487 PEX26Q7Z412 305 aa17.77■□□□□ 0.44
SHMT2-232ENST00000557487 NELFCDQ8IXH7 590 aa17.77■□□□□ 0.44
SHMT2-232ENST00000557487 FRMPD2Q68DX3 1309 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-232ENST00000557487 CYP3A7-CYP3A51PA0A087WV96 503 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 KRIT1O00522 736 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 KRT18P05783 430 aaKnown RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 XRCC5P13010 732 aaKnown RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 IL1R1P14778 569 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 FERP16591 822 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 CYP3A7P24462 503 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 UAP1Q16222 522 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 KNOP1Q1ED39 458 aaKnown RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 GPIHBP1Q8IV16 184 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 METTL13Q8N6R0 699 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 CENPTQ96BT3 561 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 MBOAT7Q96N66 472 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 NAP1L3Q99457 506 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 RAB17Q9H0T7 212 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 JMJD4Q9H9V9 463 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 KCNMB3Q9NPA1 279 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 UTP11Q9Y3A2 253 aaKnown RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 TTLL1O95922 423 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 ERCC3P19447 782 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 SEC24CP53992 1094 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 SLC12A3P55017 1021 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 GRIK5Q16478 980 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 BMT2Q1RMZ1 405 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 CROCCP2Q86T23 111 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 ERMNQ8TAM6 284 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 DHX36Q9H2U1 1008 aaKnown RBP17.76■□□□□ 0.43
SHMT2-232ENST00000557487 PSTPIP2Q9H939 334 aa17.76■□□□□ 0.43
SHMT2-232ENST00000557487 E9PMD0 336 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 TULP1O00294 542 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-232ENST00000557487 ZBTB5O15062 677 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 TBX3O15119 743 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 RASSF9O75901 435 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 MMP10P09238 476 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 ATP2B4P23634 1241 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 PON1P27169 355 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 HPDP32754 393 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-232ENST00000557487 GABPAQ06546 454 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 IFT88Q13099 833 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 TRADDQ15628 312 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 ADGRF4Q8IZF3 695 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 HES6Q96HZ4 224 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 CD209Q9NNX6 404 aa17.75■□□□□ 0.43
SHMT2-232ENST00000557487 MYO1FO00160 1098 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 JAM2P57087 298 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 RNASE9P60153 205 aaKnown RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 EPHA7Q15375 998 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 EPM2AIP1Q7L775 607 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 TMC3Q7Z5M5 1100 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 HOOK3Q86VS8 718 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 CCDC13Q8IYE1 715 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 FGFBP2Q9BYJ0 223 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 FHDC1Q9C0D6 1143 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 TBC1D7Q9P0N9 293 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 TMCO5BA8MYB1 307 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 RDXP35241 583 aaKnown RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 UBE2SQ16763 222 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 LACTB2Q53H82 288 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 ODF2Q5BJF6 829 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 NT5DC3Q86UY8 548 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 CACNA2D3Q8IZS8 1091 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 MAGEC3Q8TD91 643 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 UBLCP1Q8WVY7 318 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 SYT17Q9BSW7 474 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 PPANQ9NQ55 473 aaKnown RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 KLC4Q9NSK0 619 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 TYW1Q9NV66 732 aaKnown RBP17.74■□□□□ 0.43
SHMT2-232ENST00000557487 AMFRQ9UKV5 643 aa17.74■□□□□ 0.43
SHMT2-232ENST00000557487 NCANO14594 1321 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 PPFIA2O75334 1257 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 GHRP10912 638 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 SLC9A1P19634 815 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 LMNB1P20700 586 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 GBP1P32455 592 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 IFFO1Q0D2I5 559 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 AP3B2Q13367 1082 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 CENPHQ9H3R5 247 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 GPCPD1Q9NPB8 672 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 DDX20Q9UHI6 824 aaKnown RBP17.73■□□□□ 0.43
SHMT2-232ENST00000557487 FOCADQ5VW36 1801 aa17.73■□□□□ 0.43
SHMT2-232ENST00000557487 FAM187AA6NFU0 413 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 CCDC172P0C7W6 258 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 MAP2K2P36507 400 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 STAT1P42224 750 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 ENOX2Q16206 610 aaKnown RBP17.72■□□□□ 0.43
SHMT2-232ENST00000557487 NFIL3Q16649 462 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 ARSHQ5FYA8 562 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 GKAP1Q5VSY0 366 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-232ENST00000557487 SYT2Q8N9I0 419 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-232ENST00000557487 CD2APQ9Y5K6 639 aa17.72■□□□□ 0.43
SHMT2-232ENST00000557487 MYH7BA7E2Y1 1941 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms