RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ANKRD54Q6NXT1 300 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 TMEM184AQ6ZMB5 413 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 RUFY4Q6ZNE9 571 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 TMTC2Q8N394 836 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 CTCFLQ8NI51 663 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-230ENST00000557427 MTMR8Q96EF0 704 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 TMEM87BQ96K49 555 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 MAF1Q9H063 256 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 RIOX1Q9H6W3 641 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 ZDHHC9Q9Y397 364 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-230ENST00000557427 ACACBO00763 2458 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 CEP250Q9BV73 2442 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 PNMA6FA0A0J9YX94 578 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 C2CD4DB7Z1M9 353 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 OPLAHO14841 1288 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 NPR3P17342 541 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 HOXA13P31271 388 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-230ENST00000557427 PUM1Q14671 1186 aaKnown RBP eCLIP14.26□□□□□ -0.13
SHMT2-230ENST00000557427 TRIM50Q86XT4 487 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 CMTR1Q8N1G2 835 aaKnown RBP14.26□□□□□ -0.13
SHMT2-230ENST00000557427 IL31RAQ8NI17 732 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 MICAL1Q8TDZ2 1067 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 LMBR1Q8WVP7 490 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 TCEANC2Q96MN5 208 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 PDCD2LQ9BRP1 358 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 AGO3Q9H9G7 860 aaKnown RBP14.26□□□□□ -0.13
SHMT2-230ENST00000557427 DLL3Q9NYJ7 618 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 SLC12A7Q9Y666 1083 aa14.26□□□□□ -0.13
SHMT2-230ENST00000557427 DDAH1O94760 285 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 ASGR2P07307 311 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 MYCLP12524 364 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-230ENST00000557427 CPA1P15085 419 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 KIF5BP33176 963 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 TECP42680 631 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 LIFRP42702 1097 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 PKP1Q13835 747 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 ANGPT1Q15389 498 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 CCDC82Q8N4S0 544 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 MTA3Q9BTC8 594 aa14.25□□□□□ -0.13
SHMT2-230ENST00000557427 BAZ2BQ9UIF8 2168 aaKnown RBP14.24□□□□□ -0.13
SHMT2-230ENST00000557427 FSCN2O14926 492 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 PLEKHA8P1O95397 391 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 HMGB1P09429 215 aaKnown RBP14.24□□□□□ -0.13
SHMT2-230ENST00000557427 ARHGAP4P98171 946 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 EXOSC10Q01780 885 aaKnown RBP14.24□□□□□ -0.13
SHMT2-230ENST00000557427 FBXO47Q5MNV8 452 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 SYNE3Q6ZMZ3 975 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 DHX32Q7L7V1 743 aaKnown RBP14.24□□□□□ -0.13
SHMT2-230ENST00000557427 VSIG10LQ86VR7 867 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 FCHSD1Q86WN1 690 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 CCDC105Q8IYK2 499 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 RRP36Q96EU6 259 aaKnown RBP14.24□□□□□ -0.13
SHMT2-230ENST00000557427 CDCA3Q99618 268 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-230ENST00000557427 POMKQ9H5K3 350 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 MLXIPQ9HAP2 919 aa14.24□□□□□ -0.13
SHMT2-230ENST00000557427 hCG_1642624A0A1W2PR95 340 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 GCOM1H8Y6P7 765 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-230ENST00000557427 LMNAP02545 664 aaKnown RBP14.23□□□□□ -0.13
SHMT2-230ENST00000557427 POLR2MP0CAP2 368 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 GNAT1P11488 350 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 PDIA4P13667 645 aaKnown RBP14.23□□□□□ -0.13
SHMT2-230ENST00000557427 GNAQP50148 359 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 HSD17B4P51659 736 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 TRAF1Q13077 416 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 LLGL2Q6P1M3 1020 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 KCNV1Q6PIU1 500 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 NPAS4Q8IUM7 802 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 SRBD1Q8N5C6 995 aaKnown RBP14.23□□□□□ -0.13
SHMT2-230ENST00000557427 FANCBQ8NB91 859 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 FLCNQ8NFG4 579 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 KCNG4Q8TDN1 519 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 MAP3K14Q99558 947 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 LZTS2Q9BRK4 669 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 MFSD1Q9H3U5 465 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 HCSTQ9UBK5 93 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 NAP1L2Q9ULW6 460 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-230ENST00000557427 TCHHQ07283 1943 aa14.23□□□□□ -0.13
SHMT2-230ENST00000557427 LARGE1O95461 756 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 CALM1P0DP23 149 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 CALM2P0DP24 149 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 CALM3P0DP25 149 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 TGFB3P10600 412 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 AOC1P19801 751 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 CD52P31358 61 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 FGD1P98174 961 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 GHRHRQ02643 423 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 UBE3AQ05086 875 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 PGM5Q15124 567 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 MICU3Q86XE3 530 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 RASGRP4Q8TDF6 673 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 GPR20Q99678 358 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 SEC63Q9UGP8 760 aaKnown RBP14.22□□□□□ -0.13
SHMT2-230ENST00000557427 TPCN1Q9ULQ1 816 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 SMC3Q9UQE7 1217 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 NR2E1Q9Y466 385 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 OTOGLQ3ZCN5 2332 aa14.22□□□□□ -0.13
SHMT2-230ENST00000557427 CHD6Q8TD26 2715 aa14.21□□□□□ -0.13
SHMT2-230ENST00000557427 BAHCC1Q9P281 2608 aa14.21□□□□□ -0.13
SHMT2-230ENST00000557427 SPTBN2O15020 2390 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms