RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 GJA9P57773 515 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 SMAD3P84022 425 aaKnown RBP6.52□□□□□ -1.37
SCFD1-221ENST00000556534 OCRLQ01968 901 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 NT5DC1Q5TFE4 455 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 FKBP9P1Q75LS8 142 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 XYLT2Q9H1B5 865 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 EMC7Q9NPA0 242 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 PARD6AQ9NPB6 346 aa6.52□□□□□ -1.37
SCFD1-221ENST00000556534 UBA6A0AVT1 1052 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 NEMP1O14524 444 aa6.51□□□□□ -1.37
SCFD1-221ENST00000556534 MAFO75444 373 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 POU3F3P20264 500 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 STRN3Q13033 797 aa6.51□□□□□ -1.37
SCFD1-221ENST00000556534 SART3Q15020 963 aaKnown RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 DPP8Q6V1X1 898 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 DDX46Q7L014 1031 aaKnown RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 CXXC5Q7LFL8 322 aaKnown RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 USP7Q93009 1102 aa6.51□□□□□ -1.37
SCFD1-221ENST00000556534 E2F7Q96AV8 911 aa6.51□□□□□ -1.37
SCFD1-221ENST00000556534 FAM126AQ9BYI3 521 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-221ENST00000556534 KRTAP4-7Q9BYR0 210 aa6.51□□□□□ -1.37
SCFD1-221ENST00000556534 TMEM168Q9H0V1 697 aa6.51□□□□□ -1.37
SCFD1-221ENST00000556534 OTOL1A6NHN0 477 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-221ENST00000556534 SASH1O94885 1247 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 CYP1A1P04798 512 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-221ENST00000556534 INHBBP09529 407 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 ID4P47928 161 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 PHC1P78364 1004 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 TOP3AQ13472 1001 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-221ENST00000556534 LRRC32Q14392 662 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 MYBPC3Q14896 1274 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 WDR72Q3MJ13 1102 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 GPR158Q5T848 1215 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 NME9Q86XW9 330 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 ZZZ3Q8IYH5 903 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 KLHL36Q8N4N3 616 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 CALML6Q8TD86 181 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 RTF1Q92541 710 aaKnown RBP6.5□□□□□ -1.37
SCFD1-221ENST00000556534 MAML3Q96JK9 1138 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 LCORQ96JN0 433 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-221ENST00000556534 MS4A5Q9H3V2 200 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 ZCCHC4Q9H5U6 513 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 IFT22Q9H7X7 185 aa6.5□□□□□ -1.37
SCFD1-221ENST00000556534 APOBEC2Q9Y235 224 aaKnown RBP6.5□□□□□ -1.37
SCFD1-221ENST00000556534 MROH6A6NGR9 719 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 DNAJC6O75061 913 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 EYA4O95677 639 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 POLD1P28340 1107 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 CSF2RBP32927 897 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 ADCY8P40145 1251 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 ETV4P43268 484 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 RGS3P49796 1198 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 CD83Q01151 205 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 SLC6A3Q01959 620 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 ROM1Q03395 351 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 TERF2Q15554 542 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 CT47A1Q5JQC4 288 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-221ENST00000556534 TTC38Q5R3I4 469 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 TMEM200BQ69YZ2 307 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 SLFN12LQ6IEE8 588 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 Q6ZUG5 572 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 FILIP1Q7Z7B0 1213 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 PASD1Q8IV76 773 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 REXO1L1PQ8IX06 675 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 AJUBAQ96IF1 538 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 TTC1Q99614 292 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 KATNBL1Q9H079 304 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 SPC25Q9HBM1 224 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 ADAM29Q9UKF5 820 aa6.49□□□□□ -1.37
SCFD1-221ENST00000556534 A0A0G2JLL6 359 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-221ENST00000556534 ZEB2O60315 1214 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 CUTAO60888 179 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 CD40P25942 277 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 APEX1P27695 318 aaKnown RBP6.48□□□□□ -1.37
SCFD1-221ENST00000556534 CNGA1P29973 690 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 ADCY1Q08828 1119 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 NFATC3Q12968 1075 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 ATP13A4Q4VNC1 1196 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 FBLN7Q53RD9 439 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 RNF187Q5TA31 235 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-221ENST00000556534 TTLL10Q6ZVT0 673 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 C11orf74Q86VG3 221 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 C7orf31Q8N865 590 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 ZNF610Q8N9Z0 462 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 SLC5A5Q92911 643 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 SCYL1Q96KG9 808 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 ZDHHC5Q9C0B5 715 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 SEMA4AQ9H3S1 761 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 POFUT1Q9H488 388 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 USP40Q9NVE5 1235 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 FBXO10Q9UK96 956 aa6.48□□□□□ -1.37
SCFD1-221ENST00000556534 ARID1BQ8NFD5 2236 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-221ENST00000556534 LCHNA4D1U4 455 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 B4GALT3O60512 393 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 HOXA5P20719 270 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 MOGSQ13724 837 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 DDB1Q16531 1140 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 PRAMEF9Q5VWM5 478 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 LHFPL2Q6ZUX7 228 aa6.47□□□□□ -1.37
SCFD1-221ENST00000556534 GPR155Q7Z3F1 870 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms