RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 PRAMEF22A3QJZ6 481 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 MATN3O15232 486 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 SDHAP31040 664 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 CD83Q01151 205 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 EIF4HQ15056 248 aaKnown RBP7.57□□□□□ -1.2
PRPF39-209ENST00000556353 CDSNQ15517 529 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 FNDC3BQ53EP0 1204 aaKnown RBP7.57□□□□□ -1.2
PRPF39-209ENST00000556353 HS1BP3Q53T59 392 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 KANK2Q63ZY3 851 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 TAX1BP1Q86VP1 789 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 CALML6Q8TD86 181 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 SH3RF3Q8TEJ3 882 aaPredicted RBP7.57□□□□□ -1.2
PRPF39-209ENST00000556353 WWC2-AS2Q96NR7 200 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 SEMA4AQ9H3S1 761 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 ZSWIM4Q9H7M6 989 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 CDC42EP3Q9UKI2 254 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 NR2E1Q9Y466 385 aa7.57□□□□□ -1.2
PRPF39-209ENST00000556353 A0A0G2JNJ9 132 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 RASSF10A6NK89 507 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 ARHGAP44Q17R89 818 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 RNF151Q2KHN1 245 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 PALM2Q8IXS6 379 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 Q9UFV3 132 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 OAZ3Q9UMX2 235 aa7.56□□□□□ -1.2
PRPF39-209ENST00000556353 ZFR2Q9UPR6 939 aaKnown RBP7.56□□□□□ -1.2
PRPF39-209ENST00000556353 GOLGA6L22H0YM25 854 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 M0R2C6 588 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 MUSKO15146 869 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 FOXS1O43638 330 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 IGFALSP35858 605 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 SQSTM1Q13501 440 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 MOGSQ13724 837 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 CATSPEREQ5SY80 951 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 TMEM200BQ69YZ2 307 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 GRAMD4Q6IC98 578 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 ZCCHC8Q6NZY4 707 aaKnown RBP7.55□□□□□ -1.2
PRPF39-209ENST00000556353 LARP4Q71RC2 724 aaKnown RBP eCLIP7.55□□□□□ -1.2
PRPF39-209ENST00000556353 OTOP1Q7RTM1 612 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 ERCC4Q92889 916 aaPredicted RBP7.55□□□□□ -1.2
PRPF39-209ENST00000556353 KIAA1683Q9H0B3 1180 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 TMPRSS5Q9H3S3 457 aa7.55□□□□□ -1.2
PRPF39-209ENST00000556353 ARHGAP6O43182 974 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 KRT37O76014 449 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 CR2P20023 1033 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 MEOX1P50221 254 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 NOLC1Q14978 699 aaKnown RBP eCLIP7.54□□□□□ -1.2
PRPF39-209ENST00000556353 CC2D1AQ6P1N0 951 aaPredicted RBP7.54□□□□□ -1.2
PRPF39-209ENST00000556353 SPRED1Q7Z699 444 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 RTKN2Q8IZC4 609 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 SH3TC2Q8TF17 1288 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 DRC1Q96MC2 740 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 CLUHP3Q96NS8 147 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 C12orf65Q9H3J6 166 aaKnown RBP7.54□□□□□ -1.2
PRPF39-209ENST00000556353 SAMD15Q9P1V8 674 aa7.54□□□□□ -1.2
PRPF39-209ENST00000556353 UNC13AQ9UPW8 1703 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 OPA1O60313 960 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 CDC14BO60729 498 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 GLRX3O76003 335 aaKnown RBP7.53□□□□□ -1.2
PRPF39-209ENST00000556353 ASLP04424 464 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 ZBTB48P10074 688 aaPredicted RBP7.53□□□□□ -1.2
PRPF39-209ENST00000556353 APEX1P27695 318 aaKnown RBP7.53□□□□□ -1.2
PRPF39-209ENST00000556353 MECP2P51608 486 aaKnown RBP7.53□□□□□ -1.2
PRPF39-209ENST00000556353 ZXDAP98168 799 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 NFYCQ13952 458 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 PCOLCEQ15113 449 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 AGBL4Q5VU57 503 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 TRIM68Q6AZZ1 485 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 USP30Q70CQ3 517 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 FILIP1Q7Z7B0 1213 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 CHST14Q8NCH0 376 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 UBXN4Q92575 508 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 DPYSL5Q9BPU6 564 aa7.53□□□□□ -1.2
PRPF39-209ENST00000556353 MRE11P49959 708 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 MAP3K12Q12852 859 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 R3HDM1Q15032 1099 aaKnown RBP7.52□□□□□ -1.21
PRPF39-209ENST00000556353 TBR1Q16650 682 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 FUKQ8N0W3 1084 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 E2F7Q96AV8 911 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 OR10A2Q9H208 303 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 CABP5Q9NP86 173 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 PUF60Q9UHX1 559 aaKnown RBP7.52□□□□□ -1.21
PRPF39-209ENST00000556353 TESMINQ9Y4I5 508 aa7.52□□□□□ -1.21
PRPF39-209ENST00000556353 TNPO3Q9Y5L0 923 aaKnown RBP7.52□□□□□ -1.21
PRPF39-209ENST00000556353 DNAJC8O75937 253 aaPredicted RBP7.51□□□□□ -1.21
PRPF39-209ENST00000556353 COMTP21964 271 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 FLT3P36888 993 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 FNTBP49356 437 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 KIF11P52732 1056 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 CCDC144BQ3MJ40 725 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 RTN4RL1Q86UN2 441 aaPredicted RBP7.51□□□□□ -1.21
PRPF39-209ENST00000556353 FOXB1Q99853 325 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 MSL2Q9HCI7 577 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 FAM184BQ9ULE4 1060 aa7.51□□□□□ -1.21
PRPF39-209ENST00000556353 MAFO75444 373 aaPredicted RBP7.5□□□□□ -1.21
PRPF39-209ENST00000556353 RAD17O75943 681 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 RANGAP1P46060 587 aaPredicted RBP7.5□□□□□ -1.21
PRPF39-209ENST00000556353 STAT5BP51692 787 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 ALDH6A1Q02252 535 aaKnown RBP7.5□□□□□ -1.21
PRPF39-209ENST00000556353 ZNF460Q14592 562 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 PRKD1Q15139 912 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms