RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 SWAP70Q9UH65 585 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 SCN7AQ01118 1682 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 CYP2J2P51589 502 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 DHX9Q08211 1270 aaKnown RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 CUL1Q13616 776 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 SLC30A10Q6XR72 485 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 IRF2BP2Q7Z5L9 587 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 TPH2Q8IWU9 490 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 TPCN2Q8NHX9 752 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 FAM163AQ96GL9 167 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 METTL14Q9HCE5 456 aaKnown RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 RGL1Q9NZL6 768 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 UTP11Q9Y3A2 253 aaKnown RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 MYO1FO00160 1098 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 MEFVO15553 781 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 TTI1O43156 1089 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 BBOX1O75936 387 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 EEF2P13639 858 aaKnown RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 TMOD1P28289 359 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 CCDC121Q6ZUS5 278 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 PIK3R5Q8WYR1 880 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 TMX4Q9H1E5 349 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-213ENST00000554805 BCAS3Q9H6U6 928 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 PCDHA2Q9Y5H9 948 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 GAKO14976 1311 aa10.36□□□□□ -0.75
SYNE2-213ENST00000554805 FGGP02679 453 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SNHG28P0DPA3 235 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 KRT13P13646 458 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 TNFAIP3P21580 790 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SHMT1P34896 483 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 HSPA9P38646 679 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CDR1P51861 262 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SLC12A3P55017 1021 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CTTNQ14247 550 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 GLYCTKQ8IVS8 523 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 DHX37Q8IY37 1157 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 FAM186BQ8IYM0 893 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SYCE1Q8N0S2 351 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CTNNBL1Q8WYA6 563 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 KAT2BQ92831 832 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 ATP8A1Q9Y2Q0 1164 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 RABGAP1Q9Y3P9 1069 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 KIAA1551Q9HCM1 1747 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 RGL2O15211 777 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CLK2P49760 499 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 GALCP54803 685 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 GABPAQ06546 454 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 KCNA1Q09470 495 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 NFIAQ12857 509 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SHROOM1Q2M3G4 852 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 FBXO11Q86XK2 927 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 KSR1Q8IVT5 923 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 MYCBPAPQ8TBZ2 947 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CCDC114Q96M63 670 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 IKZF4Q9H2S9 585 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 TMBIM4Q9HC24 238 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SPATA31A6Q5VVP1 1343 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 GDF11O95390 407 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 FERP16591 822 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 NMT1P30419 496 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 HNRNPH1P31943 449 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 COPB2P35606 906 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 ZNF211Q13398 564 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CERKLQ49MI3 558 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 HYIQ5T013 277 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 C15orf52Q6ZUT6 534 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 CPLX4Q7Z7G2 160 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 SYCP3Q8IZU3 236 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 MREGQ8N565 214 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 RBM46Q8TBY0 533 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 TRIM51Q9BSJ1 452 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 RUSC1Q9BVN2 902 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 AMNQ9BXJ7 453 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 YY1AP1Q9H869 796 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 PLCB1Q9NQ66 1216 aa10.35□□□□□ -0.75
SYNE2-213ENST00000554805 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 TYW1Q9NV66 732 aaKnown RBP10.35□□□□□ -0.75
SYNE2-213ENST00000554805 PITPNM2Q9BZ72 1349 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 CCDC88AQ3V6T2 1871 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 PDXKO00764 312 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 MARSP56192 900 aaKnown RBP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 SF3B2Q13435 895 aaKnown RBP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 MTMR3Q13615 1198 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 CDC42EP5Q6NZY7 148 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 FOXR2Q6PJQ5 311 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 HS2ST1Q7LGA3 356 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 TRMT1LQ7Z2T5 733 aaKnown RBP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 SPATS2Q86XZ4 545 aaKnown RBP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 GPATCH11Q8N954 259 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 UHMK1Q8TAS1 419 aaKnown RBP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 IPO4Q8TEX9 1081 aaKnown RBP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 ZNF622Q969S3 477 aaKnown RBP eCLIP10.34□□□□□ -0.75
SYNE2-213ENST00000554805 TEKT1Q969V4 418 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 CABS1Q96KC9 395 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 CCDC113Q9H0I3 377 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 BCS1LQ9Y276 419 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 LAMB1P07942 1786 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 GOLGA6L10A0A0M3HER8 536 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 CCDC188H7C350 402 aa10.34□□□□□ -0.75
SYNE2-213ENST00000554805 DDX3XO00571 662 aaKnown RBP eCLIP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms