RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 NDUFA10O95299 355 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 GPS2Q13227 327 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 KNOP1Q1ED39 458 aaKnown RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 ZNF569Q5MCW4 686 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 RRAGAQ7L523 313 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 KRT26Q7Z3Y9 468 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 CLMNQ96JQ2 1002 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 TMOD4Q9NZQ9 345 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 ZNF214Q9UL59 606 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 ARHGEF35A5YM69 484 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 EFCAB8A8MWE9 144 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 FGFR1OPO95684 399 aaKnown RBP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 EPHA7Q15375 998 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 DCAF17Q5H9S7 520 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 PCNX4Q63HM2 1172 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 ERGIC2Q96RQ1 377 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 GUCA1BQ9UMX6 200 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 PCDHB13Q9Y5F0 798 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 UBIAD1Q9Y5Z9 338 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 FAM170AA1A519 330 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 DSG3P32926 999 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 MAGEA9P43362 315 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 ARID5AQ03989 594 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 KCNMA1Q12791 1236 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 TCERG1LQ5VWI1 586 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 PLA2G4FQ68DD2 849 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 GPATCH11Q8N954 259 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 NACC1Q96RE7 527 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 JADE2Q9NQC1 790 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 CWC15Q9P013 229 aaKnown RBP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 EIF3CLB5ME19 914 aaKnown RBP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 USO1O60763 962 aaKnown RBP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 FSTL1Q12841 308 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 ODR4Q5SWX8 454 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 B3GNT9Q6UX72 402 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 REPS2Q8NFH8 660 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.84□□□□□ -0.354e-7■■□□□ 12.9
SHMT2-212ENST00000554467 EIF3CQ99613 913 aaKnown RBP12.84□□□□□ -0.35
SHMT2-212ENST00000554467 PARD6BQ9BYG5 372 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 R3HDMLQ9H3Y0 253 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 ELP3Q9H9T3 547 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 GPRC5CQ9NQ84 441 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 AFG3L2Q9Y4W6 797 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 SNCAIPQ9Y6H5 919 aa12.84□□□□□ -0.35
SHMT2-212ENST00000554467 PHLPP2Q6ZVD8 1323 aa12.83□□□□□ -0.35
SHMT2-212ENST00000554467 LRRC53A6NM62 1247 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 TISP43B9A030 160 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 HIP1RO75146 1068 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 AKAP3O75969 853 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 CCNE2O96020 404 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 NPEPPSP55786 919 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 SUPT20HL1Q3ZLR7 823 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 TTC31Q49AM3 519 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 C9orf131Q5VYM1 1079 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 EPM2AIP1Q7L775 607 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 RIT2Q99578 217 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 SYT17Q9BSW7 474 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 LSM14BQ9BX40 385 aaKnown RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 NHEJ1Q9H9Q4 299 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 PARVGQ9HBI0 331 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 TCEAL9Q9UHQ7 104 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 ASTN1O14525 1302 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 RCCD1A6NED2 376 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 CETN3O15182 167 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 N4BP1O75113 896 aaKnown RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 ACTN1P12814 892 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 FECHP22830 423 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 ZBED6P86452 979 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 TTLL12Q14166 644 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 PADI6Q6TGC4 694 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 CATSPERGQ6ZRH7 1159 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 SULF1Q8IWU6 871 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 OTUD5Q96G74 571 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 DUSP10Q9Y6W6 482 aa12.83□□□□□ -0.36
SHMT2-212ENST00000554467 RBBP6Q7Z6E9 1792 aaKnown RBP12.83□□□□□ -0.36
SHMT2-212ENST00000554467 SPDYE16A6NNV3 312 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-212ENST00000554467 NR3C2P08235 984 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 ARHGAP25P42331 645 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 SOX10P56693 466 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 HERVK_113P62684 666 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 PPP2R3AQ06190 1150 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 GADL1Q6ZQY3 521 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 FAM178BQ8IXR5 827 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 DAW1Q8N136 415 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 SLC35F6Q8N357 371 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 RDH13Q8NBN7 331 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 DCPSQ96C86 337 aaKnown RBP12.82□□□□□ -0.36
SHMT2-212ENST00000554467 A1CFQ9NQ94 594 aaKnown RBP12.82□□□□□ -0.36
SHMT2-212ENST00000554467 ZNHIT6Q9NWK9 470 aaKnown RBP12.82□□□□□ -0.36
SHMT2-212ENST00000554467 NR3C1P04150 777 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 CYP2J2P51589 502 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 CNTN2Q02246 1040 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 RSRC2Q7L4I2 434 aaKnown RBP12.82□□□□□ -0.36
SHMT2-212ENST00000554467 CACNA2D4Q7Z3S7 1137 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 TRIM59Q8IWR1 403 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 MAP2K7O14733 419 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 KIF5CO60282 957 aa12.82□□□□□ -0.36
SHMT2-212ENST00000554467 POLR2FP61218 127 aaKnown RBP12.82□□□□□ -0.36
SHMT2-212ENST00000554467 KCNH2Q12809 1159 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms