RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SCN10AQ9Y5Y9 1956 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 FAM237AA0A1B0GTK4 181 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 A0A1B0GVL5 298 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 RRN3P2A6NIE6 340 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 E9PMD0 336 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 PRPF40AO75400 957 aaKnown RBP13.66□□□□□ -0.22
SHMT2-209ENST00000553949 GNAT1P11488 350 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 PFKFB1P16118 471 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 RARRES1P49788 294 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 NPEPPSP55786 919 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 TARBP2Q15633 366 aaKnown RBP13.66□□□□□ -0.22
SHMT2-209ENST00000553949 MTERF2Q49AM1 385 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 XKR9Q5GH70 373 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 MARCH8Q5T0T0 291 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 RRAGBQ5VZM2 374 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 GDF6Q6KF10 455 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-209ENST00000553949 CCDC73Q6ZRK6 1079 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 PDILTQ8N807 584 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 FSIP1Q8NA03 581 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 LRRC15Q8TF66 581 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 TRAPPC12Q8WVT3 735 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 MRPS27Q92552 414 aaKnown RBP13.66□□□□□ -0.22
SHMT2-209ENST00000553949 CEP170P1Q96L14 293 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 CCDC43Q96MW1 224 aaKnown RBP13.66□□□□□ -0.22
SHMT2-209ENST00000553949 CEP89Q96ST8 783 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 SH2D3AQ9BRG2 576 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 KCNH3Q9ULD8 1083 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 PPME1Q9Y570 386 aa13.66□□□□□ -0.22
SHMT2-209ENST00000553949 MBLAC1A4D2B0 266 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-209ENST00000553949 PQBP1O60828 265 aaKnown RBP13.65□□□□□ -0.22
SHMT2-209ENST00000553949 GADD45BO75293 160 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-209ENST00000553949 EYA4O95677 639 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 STAT6P42226 847 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 ADAM17P78536 824 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 ZNF200P98182 395 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-209ENST00000553949 LRRC26Q2I0M4 334 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 TRIM60Q495X7 471 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 NAALADL2Q58DX5 795 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 ANKRD33Q7Z3H0 272 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 FAM126BQ8IXS8 530 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 RAD54LQ92698 747 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 TRPV6Q9H1D0 765 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 BHMT2Q9H2M3 363 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 GOLPH3LQ9H4A5 285 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 BLOC1S4Q9NUP1 217 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 TRMT13Q9NUP7 481 aaKnown RBP13.65□□□□□ -0.22
SHMT2-209ENST00000553949 STK17AQ9UEE5 414 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 TUBE1Q9UJT0 475 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 HPSEQ9Y251 543 aa13.65□□□□□ -0.22
SHMT2-209ENST00000553949 MKI67P46013 3256 aaKnown RBP13.65□□□□□ -0.23
SHMT2-209ENST00000553949 MROH7Q68CQ1 1323 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 ARHGEF35A5YM69 484 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 POLR2DO15514 142 aaKnown RBP13.64□□□□□ -0.23
SHMT2-209ENST00000553949 TREHO43280 583 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 B4GALT4O60513 344 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 C22orf31O95567 290 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 PLA2G4BP0C869 781 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 KLRC1P26715 233 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 NDUFA8P51970 172 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 RTP1P59025 263 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 UBE2HP62256 183 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 TBC1D8BQ0IIM8 1120 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 E2F4Q16254 413 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 PTGISQ16647 500 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 PADI6Q6TGC4 694 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 MTHFD1LQ6UB35 978 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 SYT2Q8N9I0 419 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-209ENST00000553949 IQUBQ8NA54 791 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 DHX58Q96C10 678 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 ZBTB10Q96DT7 871 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 CTAGE1Q96RT6 745 aa13.64□□□□□ -0.23
SHMT2-209ENST00000553949 PYM1Q9BRP8 204 aaKnown RBP13.64□□□□□ -0.23
SHMT2-209ENST00000553949 TCHHQ07283 1943 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 GOLGA6L22H0YM25 854 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 MAGEB2O15479 319 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 MAFO75444 373 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-209ENST00000553949 CD4P01730 458 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 SSBP05455 408 aaKnown RBP eCLIP13.63□□□□□ -0.23
SHMT2-209ENST00000553949 RFC5P40937 340 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 SYKP43405 635 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 POLGP54098 1239 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-209ENST00000553949 SLC12A3P55017 1021 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 TLE2Q04725 743 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 SLC7A3Q8WY07 619 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 LARP4BQ92615 738 aaKnown RBP13.63□□□□□ -0.23
SHMT2-209ENST00000553949 TOX2Q96NM4 488 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 DHX33Q9H6R0 707 aaKnown RBP13.63□□□□□ -0.23
SHMT2-209ENST00000553949 NOD1Q9Y239 953 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 ATP11BQ9Y2G3 1177 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 PCDHA2Q9Y5H9 948 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 DNAH12Q6ZR08 3092 aa13.63□□□□□ -0.23
SHMT2-209ENST00000553949 IGKV6-21A0A0C4DH24 114 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 DCDC2CA8MYV0 355 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 TLR3O15455 904 aaKnown RBP13.62□□□□□ -0.23
SHMT2-209ENST00000553949 USO1O60763 962 aaKnown RBP13.62□□□□□ -0.23
SHMT2-209ENST00000553949 DGAT1O75907 488 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 CYP2C9P11712 490 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 DHX8Q14562 1220 aaKnown RBP13.62□□□□□ -0.23
SHMT2-209ENST00000553949 MCM6Q14566 821 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 EMC2Q15006 297 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms