RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 FAM217BQ9NTX9 383 aaPredicted RBP13.5□□□□□ -0.25
SRP54-203ENST00000553544 RBM28Q9NW13 759 aaKnown RBP13.5□□□□□ -0.25
SRP54-203ENST00000553544 PPP4R2Q9NY27 417 aa13.5□□□□□ -0.25
SRP54-203ENST00000553544 PADI3Q9ULW8 664 aa13.5□□□□□ -0.25
SRP54-203ENST00000553544 PCDHB7Q9Y5E2 793 aa13.5□□□□□ -0.25
SRP54-203ENST00000553544 CNTNAP5Q8WYK1 1306 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 ZBTB43O43298 467 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 REC8O95072 547 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 SRGAP2BP0DMP2 458 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 INSRRP14616 1297 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 CPA1P15085 419 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 RCAN1P53805 252 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 PAK2Q13177 524 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 PTPN21Q16825 1174 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 ZBTB33Q86T24 672 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 SUSD6Q92537 303 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 GPRASP2Q96D09 838 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 RIPOR3Q96MK2 946 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 AGXT2Q9BYV1 514 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 CELF4Q9BZC1 486 aaKnown RBP13.49□□□□□ -0.25
SRP54-203ENST00000553544 TLR9Q9NR96 1032 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 PCDHA2Q9Y5H9 948 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 TRPV2Q9Y5S1 764 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 KAT6AQ92794 2004 aa13.49□□□□□ -0.25
SRP54-203ENST00000553544 KLF18A0A0U1RQI7 1052 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 hCG_1642624A0A1W2PR95 340 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 H0Y858 1186 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 MAFGO15525 162 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 KCNA2P16389 499 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 TMEM62Q0P6H9 643 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 RTN1Q16799 776 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 TMEM184AQ6ZMB5 413 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 JAKMIP1Q96N16 626 aaKnown RBP13.48□□□□□ -0.25
SRP54-203ENST00000553544 AZI2Q9H6S1 392 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 PSTPIP2Q9H939 334 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 TMEM260Q9NX78 707 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 PCDHGC5Q9Y5F6 944 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 SPTBN4Q9H254 2564 aa13.48□□□□□ -0.25
SRP54-203ENST00000553544 RIF1Q5UIP0 2472 aaKnown RBP13.48□□□□□ -0.25
SRP54-203ENST00000553544 IGSF9BQ9UPX0 1349 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 PROB1E7EW31 1015 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 ITGB5P18084 799 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 CDC27P30260 824 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 SARSP49591 514 aaKnown RBP13.47□□□□□ -0.25
SRP54-203ENST00000553544 ERVFC1P60507 584 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 KRT76Q01546 638 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 NFX1Q12986 1120 aaKnown RBP13.47□□□□□ -0.25
SRP54-203ENST00000553544 DUSP6Q16828 381 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 TYW1BQ6NUM6 668 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 Q6ZUG5 572 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 ZBTB10Q96DT7 871 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 S1PR5Q9H228 398 aa13.47□□□□□ -0.25
SRP54-203ENST00000553544 PUF60Q9UHX1 559 aaKnown RBP13.47□□□□□ -0.25
SRP54-203ENST00000553544 GOLGA8AA7E2F4 631 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 TBKBP1A7MCY6 615 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 GOLGA8BA8MQT2 603 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 GALR2O43603 387 aaPredicted RBP13.46□□□□□ -0.25
SRP54-203ENST00000553544 FGF18O76093 207 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 IBSPP21815 317 aaPredicted RBP13.46□□□□□ -0.25
SRP54-203ENST00000553544 RPS6KB1P23443 525 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 ADD1P35611 737 aaKnown RBP13.46□□□□□ -0.25
SRP54-203ENST00000553544 TECP42680 631 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 GATMP50440 423 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 RBM10P98175 930 aaKnown RBP13.46□□□□□ -0.25
SRP54-203ENST00000553544 MTMR1Q13613 665 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 ODR4Q5SWX8 454 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 WWC2Q6AWC2 1192 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 BLOC1S2Q6QNY1 142 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 TEX2Q8IWB9 1127 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 UBALD2Q8IYN6 164 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 THNSL1Q8IYQ7 743 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 VN1R2Q8NFZ6 395 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 TMX1Q9H3N1 280 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 TYW1Q9NV66 732 aaKnown RBP13.46□□□□□ -0.25
SRP54-203ENST00000553544 PKD2L1Q9P0L9 805 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 TRPC6Q9Y210 931 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 NR2E1Q9Y466 385 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 V9GY48 417 aaPredicted RBP13.46□□□□□ -0.25
SRP54-203ENST00000553544 WDR81Q562E7 1941 aa13.46□□□□□ -0.25
SRP54-203ENST00000553544 NID2Q14112 1375 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 KDM3AQ9Y4C1 1321 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 SMIM35A0A1B0GVV1 85 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 DENND3A2RUS2 1198 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 HOXB8P17481 243 aaPredicted RBP13.45□□□□□ -0.26
SRP54-203ENST00000553544 PSMA5P28066 241 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 EVCP57679 992 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 APOBRQ0VD83 1088 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 FAM102BQ5T8I3 360 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 ANKRD54Q6NXT1 300 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 SLC24A5Q71RS6 500 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 PLPPR4Q7Z2D5 763 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 HEATR3Q7Z4Q2 680 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 RASGRP4Q8TDF6 673 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 BRF1Q92994 677 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 JPH1Q9HDC5 661 aaPredicted RBP13.45□□□□□ -0.26
SRP54-203ENST00000553544 JADE2Q9NQC1 790 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 RGS18Q9NS28 235 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 C1orf112Q9NSG2 853 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 LZTS1Q9Y250 596 aa13.45□□□□□ -0.26
SRP54-203ENST00000553544 UBIAD1Q9Y5Z9 338 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms