RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 UTYO14607 1347 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 DCTN3O75935 186 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 GPC5P78333 572 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 EPHA10Q5JZY3 1008 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 CIAPIN1Q6FI81 312 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 CYB5R4Q7L1T6 521 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 TMEM35BQ8NCS4 154 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 PDZD8Q8NEN9 1154 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 NARFQ9UHQ1 456 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 SPATA31A3Q5VYP0 1347 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 A0A1W2PQC6 194 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 WDR64B1ANS9 1081 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 CYP27B1O15528 508 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 PPFIA2O75334 1257 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 DNAJC8O75937 253 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ZNF667Q5HYK9 610 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ZNF449Q6P9G9 518 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 HEXIM2Q96MH2 286 aaKnown RBP12.39□□□□□ -0.43
SYNE2-208ENST00000553289 AP1M1Q9BXS5 423 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 KLC2Q9H0B6 622 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 NFU1Q9UMS0 254 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ABCB11O95342 1321 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 PALMO75781 387 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 CALB1P05937 261 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ADRA2BP18089 450 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 PEX3P56589 373 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 BBS9Q3SYG4 887 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ENAHQ8N8S7 591 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-208ENST00000553289 RUBCNQ92622 972 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 NOC2LQ9Y3T9 749 aaKnown RBP12.39□□□□□ -0.43
SYNE2-208ENST00000553289 SKIP12755 728 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 CA4P22748 312 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 SFNP31947 248 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ARL4CP56559 192 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ZBTB33Q86T24 672 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 GUF1Q8N442 669 aaKnown RBP12.39□□□□□ -0.43
SYNE2-208ENST00000553289 DEPDC1BQ8WUY9 529 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 ATP6V1E2Q96A05 226 aa12.39□□□□□ -0.43
SYNE2-208ENST00000553289 PNPLA7Q6ZV29 1317 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 EIF2AK2P19525 551 aaKnown RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 XPAP23025 273 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 HOXA13P31271 388 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 SPARCL1Q14515 664 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 RCSD1Q6JBY9 416 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 KRT27Q7Z3Y8 459 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 TTC39CQ8N584 583 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 BARHL2Q9NY43 387 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PNMA3Q9UL41 463 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PACSIN2Q9UNF0 486 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 MINPP1Q9UNW1 487 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ORC6Q9Y5N6 252 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ORC4O43929 436 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ATP5HO75947 161 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PLS3P13797 630 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 CD58P19256 250 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PSMA2P25787 234 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 SLCO1A2P46721 670 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 COASYQ13057 564 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 KLC3Q6P597 504 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 TOGARAM2Q6ZUX3 1019 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 C7orf31Q8N865 590 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 GOLPH3LQ9H4A5 285 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 DCP1AQ9NPI6 582 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ADAM22Q9P0K1 906 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PLAAQ9Y263 795 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 REREQ9P2R6 1566 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 TBXAS1P24557 533 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PRCPP42785 496 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 GPR162Q16538 588 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 KNOP1Q1ED39 458 aaKnown RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PODNQ7Z5L7 613 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 SFR1Q86XK3 245 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ISCA1Q9BUE6 129 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ZRANB2O95218 330 aaKnown RBP eCLIP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 LMNAP02545 664 aaKnown RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 PPARGP37231 505 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 ESRRGP62508 458 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 MTMR1Q13613 665 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 MCUQ8NE86 351 aa12.38□□□□□ -0.43
SYNE2-208ENST00000553289 SKA2Q8WVK7 121 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 CNOT8Q9UFF9 292 aaKnown RBP12.38□□□□□ -0.43
SYNE2-208ENST00000553289 MROH7-TTC4A0A0A0MT08 1334 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 CROCC2H7BZ55 1655 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 LRRC53A6NM62 1247 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 USP17L5A8MUK1 530 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 TOM1L1O75674 476 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 ZNF189O75820 626 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-208ENST00000553289 FDX1P10109 184 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 CRKP46108 304 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 SLC7A5Q01650 507 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 HLFQ16534 295 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 ENOSF1Q7L5Y1 443 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 CNPY4Q8N129 248 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 GH2P01242 217 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 MYBL1P10243 752 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 NAALADL2Q58DX5 795 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 SPOPLQ6IQ16 392 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 C4orf50Q6ZRC1 276 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 RNF139Q8WU17 664 aa12.37□□□□□ -0.43
SYNE2-208ENST00000553289 VPS39Q96JC1 886 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms