RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CMTR2Q8IYT2 770 aaKnown RBP13.03□□□□□ -0.32
NEK3-204ENST00000552973 KLHL23Q8NBE8 558 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 SPPL3Q8TCT6 385 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 TMEM40Q8WWA1 233 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 CRYGNQ8WXF5 182 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 FAM122AQ96E09 287 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 PLVAPQ9BX97 442 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 ZMYND12Q9H0C1 365 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 ERVK-5Q9HDB9 667 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 SIP14410 1827 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 REV3LO60673 3130 aa13.02□□□□□ -0.32
NEK3-204ENST00000552973 ZBTB42B2RXF5 422 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 MMP1P03956 469 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 VTNP04004 478 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 ITGB1P05556 798 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 HSPA4P34932 840 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 PLA2G5P39877 138 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 RCAN1P53805 252 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 CCT2P78371 535 aaKnown RBP13.02□□□□□ -0.33
NEK3-204ENST00000552973 AKAP17AQ02040 695 aaKnown RBP13.02□□□□□ -0.33
NEK3-204ENST00000552973 COL19A1Q14993 1142 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 KIZQ2M2Z5 673 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 PRR16Q569H4 304 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 ZNF484Q5JVG2 852 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 SPOUT1Q5T280 376 aaKnown RBP13.02□□□□□ -0.33
NEK3-204ENST00000552973 FAM102BQ5T8I3 360 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 ADGRD2Q7Z7M1 963 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 TEX2Q8IWB9 1127 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 REXO1Q8N1G1 1221 aaKnown RBP13.02□□□□□ -0.33
NEK3-204ENST00000552973 METTL13Q8N6R0 699 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 POF1BQ8WVV4 589 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 KCNB2Q92953 911 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 OSMRQ99650 979 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 ADAM2Q99965 735 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 SLC26A6Q9BXS9 759 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 GABBR1Q9UBS5 961 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 ST3GAL5Q9UNP4 418 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 SAMM50Q9Y512 469 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 PCDHB7Q9Y5E2 793 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 PCDHGC5Q9Y5F6 944 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 KDM3AQ9Y4C1 1321 aa13.02□□□□□ -0.33
NEK3-204ENST00000552973 ESYT2A0FGR8 921 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 DENND3A2RUS2 1198 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 TBKBP1A7MCY6 615 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 NCK2O43639 380 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 C22orf31O95567 290 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 RPS6KB1P23443 525 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 GNA11P29992 359 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 SARSP49591 514 aaKnown RBP13.01□□□□□ -0.33
NEK3-204ENST00000552973 ZP2Q05996 745 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 CTC1Q2NKJ3 1217 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 RBM23Q86U06 439 aaKnown RBP13.01□□□□□ -0.33
NEK3-204ENST00000552973 CCDC12Q8WUD4 166 aaPredicted RBP13.01□□□□□ -0.33
NEK3-204ENST00000552973 ZNF668Q96K58 619 aaPredicted RBP13.01□□□□□ -0.33
NEK3-204ENST00000552973 NCOA5Q9HCD5 579 aaKnown RBP13.01□□□□□ -0.33
NEK3-204ENST00000552973 TBC1D22BQ9NU19 505 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 VPS54Q9P1Q0 977 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 HCSTQ9UBK5 93 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 TCEAL9Q9UHQ7 104 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 HCN4Q9Y3Q4 1203 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 PCDHA10Q9Y5I2 948 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 MAFBQ9Y5Q3 323 aaPredicted RBP13.01□□□□□ -0.33
NEK3-204ENST00000552973 COL4A6Q14031 1691 aa13.01□□□□□ -0.33
NEK3-204ENST00000552973 COL1A2P08123 1366 aa13□□□□□ -0.33
NEK3-204ENST00000552973 GPR182O15218 404 aa13□□□□□ -0.33
NEK3-204ENST00000552973 MBTPS2O43462 519 aa13□□□□□ -0.33
NEK3-204ENST00000552973 CHMP2AO43633 222 aa13□□□□□ -0.33
NEK3-204ENST00000552973 EDIL3O43854 480 aa13□□□□□ -0.33
NEK3-204ENST00000552973 TBX10O75333 385 aa13□□□□□ -0.33
NEK3-204ENST00000552973 PSAPP07602 524 aa13□□□□□ -0.33
NEK3-204ENST00000552973 NDUFV1P49821 464 aa13□□□□□ -0.33
NEK3-204ENST00000552973 CLCN3P51790 818 aa13□□□□□ -0.33
NEK3-204ENST00000552973 SETQ01105 290 aaPredicted RBP13□□□□□ -0.33
NEK3-204ENST00000552973 NTRK3Q16288 839 aa13□□□□□ -0.33
NEK3-204ENST00000552973 ZNF746Q6NUN9 644 aaPredicted RBP13□□□□□ -0.33
NEK3-204ENST00000552973 FAM228AQ86W67 206 aa13□□□□□ -0.33
NEK3-204ENST00000552973 MICAL1Q8TDZ2 1067 aa13□□□□□ -0.33
NEK3-204ENST00000552973 BBXQ8WY36 941 aaPredicted RBP13□□□□□ -0.33
NEK3-204ENST00000552973 P2RX5Q93086 422 aa13□□□□□ -0.33
NEK3-204ENST00000552973 GJA10Q969M2 543 aa13□□□□□ -0.33
NEK3-204ENST00000552973 LARP6Q9BRS8 491 aaKnown RBP13□□□□□ -0.33
NEK3-204ENST00000552973 RGS18Q9NS28 235 aa13□□□□□ -0.33
NEK3-204ENST00000552973 FAM50BQ9Y247 325 aa13□□□□□ -0.33
NEK3-204ENST00000552973 PER2O15055 1255 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 GPR32O75388 356 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 FGFR1P11362 822 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 ALADP13716 330 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 PDIA3P30101 505 aaKnown RBP12.99□□□□□ -0.33
NEK3-204ENST00000552973 CIITAP33076 1130 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 NRIP1P48552 1158 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 CRYBB1P53674 252 aaPredicted RBP12.99□□□□□ -0.33
NEK3-204ENST00000552973 NLRP5P59047 1200 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 ADAM15Q13444 863 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 NAALADL2Q58DX5 795 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 EFCAB12Q6NXP0 572 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 SLC24A5Q71RS6 500 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 ADHFE1Q8IWW8 467 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 SMAP1Q8IYB5 467 aaPredicted RBP12.99□□□□□ -0.33
NEK3-204ENST00000552973 LRRC71Q8N4P6 559 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 LENG9Q96B70 501 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms