RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PPP1R9AQ9ULJ8 1098 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZMYND8Q9ULU4 1186 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 C15orf41Q9Y2V0 281 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF804BA4D1E1 1349 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SMCO2A6NFE2 343 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 UFL1O94874 794 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 FGGP02679 453 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 GCKP35557 465 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 PRPHP41219 470 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 NCALDP61601 193 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 BIRC2Q13490 618 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SNX1Q13596 522 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CUL1Q13616 776 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 UBE4AQ14139 1066 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SLC29A2Q14542 456 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 THEMIS2Q5TEJ8 643 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 AGBL2Q5U5Z8 902 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TBC1D9BQ66K14 1250 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CDCA2Q69YH5 1023 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 OTUD6AQ7L8S5 288 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TXNRD3Q86VQ6 643 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 KSR1Q8IVT5 923 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ARFGAP2Q8N6H7 521 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 MAB21L3Q8N8X9 362 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CCDC63Q8NA47 563 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ANKLE1Q8NAG6 615 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CCDC197Q8NCU1 140 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 OLIG1Q8TAK6 271 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 MGARPQ8TDB4 240 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ACTRT1Q8TDG2 376 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TBC1D22AQ8WUA7 517 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ZBTB10Q96DT7 871 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 GOPCQ9HD26 462 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ZDHHC18Q9NUE0 388 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TRPC6Q9Y210 931 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 COL4A3BPQ9Y5P4 624 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SHANK3Q9BYB0 1731 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 FRMPD2Q68DX3 1309 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SPDYE3A6NKU9 549 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 UBAP1LF5GYI3 381 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 PGRMC1O00264 195 aaKnown RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 IGF2BP3O00425 579 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TOM1O60784 492 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CAMTA2O94983 1202 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 FGFR4P22455 802 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TUBP50607 506 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 PLTPP55058 493 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 IFFO1Q0D2I5 559 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 COASYQ13057 564 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 GRIK5Q16478 980 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ZDHHC24Q6UX98 284 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 RUFY4Q6ZNE9 571 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CPNE8Q86YQ8 564 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TRIM59Q8IWR1 403 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 FBXO25Q8TCJ0 367 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SH3RF3Q8TEJ3 882 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SEC14L1Q92503 715 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TAF4BQ92750 862 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 LRRC45Q96CN5 670 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 MTMR9Q96QG7 549 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 NKX1-2Q9UD57 310 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 STK38LQ9Y2H1 464 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 STXBP5LQ9Y2K9 1186 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SNX24Q9Y343 169 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 RPTORQ8N122 1335 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 A0A1B0GUA9 196 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ANKRD63C9JTQ0 380 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 KLRF2D3W0D1 207 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 E9PMD0 336 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 CAPN15O75808 1086 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 NTSR2O95665 410 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 GH1P01241 217 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 VIMP08670 466 aaKnown RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SLC8A1P32418 973 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 MMP13P45452 471 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 KLRC3Q07444 240 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 KCNH2Q12809 1159 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 PRPF4BQ13523 1007 aaKnown RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 GRM4Q14833 912 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 C11orf91Q3C1V1 193 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 COBLL1Q53SF7 1204 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SPTY2D1Q68D10 685 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ALKBH5Q6P6C2 394 aaKnown RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 INTS5Q6P9B9 1019 aaKnown RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SEPT14Q6ZU15 432 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TRPM8Q7Z2W7 1104 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 NEK8Q86SG6 692 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 DAAM2Q86T65 1068 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 NT5DC3Q86UY8 548 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 PALB2Q86YC2 1186 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 EGFL6Q8IUX8 553 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 LRRC47Q8N1G4 583 aaKnown RBP5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SCFD1Q8WVM8 642 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 C18orf8Q96DM3 657 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 TMEM47Q9BQJ4 181 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 ZMYND12Q9H0C1 365 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SH3GLB2Q9NR46 395 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 SLC5A4Q9NY91 659 aa5.28□□□□□ -1.56
LIMA1-214ENST00000552783 AIPL1Q9NZN9 384 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms