RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KRT15P19012 456 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 SCNN1BP51168 640 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 GUCY2FP51841 1108 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 GTF2A2P52657 109 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 IL2P60568 153 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 NKX3-2P78367 333 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 TMPRSS15P98073 1019 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 ADAM9Q13443 819 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 FOXE3Q13461 319 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 STAT4Q14765 748 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 SART3Q15020 963 aaKnown RBP5.67□□□□□ -1.5
VPS29-205ENST00000548539 DHCR24Q15392 516 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 HS1BP3Q53T59 392 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 BRDTQ58F21 947 aaPredicted RBP5.67□□□□□ -1.5
VPS29-205ENST00000548539 OVCH1Q7RTY7 1134 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 MILR1Q7Z6M3 343 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 ZNF575Q86XF7 245 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 WDR66Q8TBY9 1149 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 CHFRQ96EP1 664 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 TRMT2BQ96GJ1 504 aaKnown RBP5.67□□□□□ -1.5
VPS29-205ENST00000548539 GPR101Q96P66 508 aaPredicted RBP5.67□□□□□ -1.5
VPS29-205ENST00000548539 YIPF4Q9BSR8 244 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 CELF4Q9BZC1 486 aaKnown RBP5.67□□□□□ -1.5
VPS29-205ENST00000548539 CDIP1Q9H305 208 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 CABP5Q9NP86 173 aa5.67□□□□□ -1.5
VPS29-205ENST00000548539 G3BP2Q9UN86 482 aaKnown RBP5.67□□□□□ -1.5
VPS29-205ENST00000548539 C22orf46C9J442 243 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 TRAF5O00463 557 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 NEMP1O14524 444 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 KATNA1O75449 491 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 CYP7B1O75881 506 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 KRT37O76014 449 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 S100BP04271 92 aaPredicted RBP5.66□□□□□ -1.5
VPS29-205ENST00000548539 GNAT1P11488 350 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 ABHD18Q0P651 414 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 CHST14Q8NCH0 376 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 CLIC6Q96NY7 704 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 TTC1Q99614 292 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 THG1LQ9NWX6 298 aaKnown RBP5.66□□□□□ -1.5
VPS29-205ENST00000548539 ZKSCAN5Q9Y2L8 839 aa5.66□□□□□ -1.5
VPS29-205ENST00000548539 PTPDC1A2A3K4 754 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 H7BY64 318 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 GAS7O60861 476 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 F2P00734 622 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 PDE6AP16499 860 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 ADCYAP1R1P41586 468 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 DSG1Q02413 1049 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 CRY1Q16526 586 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 CR1LQ2VPA4 569 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 C16orf59Q7L2K0 433 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 OSTM1Q86WC4 334 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 C2orf69Q8N8R5 385 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 COG1Q8WTW3 980 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 CHTF18Q8WVB6 975 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 ZSWIM3Q96MP5 696 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 IFT22Q9H7X7 185 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 BARX1Q9HBU1 254 aaPredicted RBP5.65□□□□□ -1.5
VPS29-205ENST00000548539 H2AFY2Q9P0M6 372 aaPredicted RBP5.65□□□□□ -1.5
VPS29-205ENST00000548539 B4GALT6Q9UBX8 382 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 FTSJ1Q9UET6 329 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 COA3Q9Y2R0 106 aaPredicted RBP5.65□□□□□ -1.5
VPS29-205ENST00000548539 ZDHHC9Q9Y397 364 aa5.65□□□□□ -1.5
VPS29-205ENST00000548539 ALG1L2C9J202 215 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 WNT9AO14904 365 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 GSTA4O15217 222 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 NKRFO15226 690 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS29-205ENST00000548539 GPR39O43194 453 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 MARCH6O60337 910 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 FKBP9O95302 570 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 BPIP17213 487 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 MECP2P51608 486 aaKnown RBP5.64□□□□□ -1.51
VPS29-205ENST00000548539 MLLT6P55198 1093 aaPredicted RBP5.64□□□□□ -1.51
VPS29-205ENST00000548539 JAM2P57087 298 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 PRKD1Q15139 912 aaPredicted RBP5.64□□□□□ -1.51
VPS29-205ENST00000548539 MIIPQ5JXC2 388 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 FKBP9P1Q75LS8 142 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 KLHL36Q8N4N3 616 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 SMC1BQ8NDV3 1235 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 PIP4K2CQ8TBX8 421 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 CEP89Q96ST8 783 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 SMAD5Q99717 465 aaKnown RBP5.64□□□□□ -1.51
VPS29-205ENST00000548539 ORAI3Q9BRQ5 295 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 TYW1Q9NV66 732 aaKnown RBP5.64□□□□□ -1.51
VPS29-205ENST00000548539 SLC5A4Q9NY91 659 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 WASHC2CQ9Y4E1 1318 aa5.64□□□□□ -1.51
VPS29-205ENST00000548539 BRINP1O60477 761 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 ZNF202O95125 648 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 AMY2AP04746 511 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 ATP2A2P16615 1042 aaKnown RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 AMY2BP19961 511 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 SLC6A11P48066 632 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 EXOSC10Q01780 885 aaKnown RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 NRN1LQ496H8 165 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 ODR4Q5SWX8 454 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 RNF219Q5W0B1 726 aaPredicted RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 FSTL4Q6MZW2 842 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 ARHGAP36Q6ZRI8 547 aa5.63□□□□□ -1.51
VPS29-205ENST00000548539 SPATS2Q86XZ4 545 aaKnown RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 PTRH1Q86Y79 214 aaKnown RBP5.63□□□□□ -1.51
VPS29-205ENST00000548539 KIF18BQ86Y91 864 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms