RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 C1QTNF9P0C862 333 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 ZNF543Q08ER8 600 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 NECTIN1Q15223 517 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 STXBP2Q15833 593 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 FBXO47Q5MNV8 452 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 CELF3Q5SZQ8 465 aaKnown RBP16.16■□□□□ 0.18
PTCH1-217ENST00000548420 KIAA1841Q6NSI8 718 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 LRSAM1Q6UWE0 723 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 STOX1Q6ZVD7 989 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 CYB5R4Q7L1T6 521 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 SYTL5Q8TDW5 730 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-217ENST00000548420 RSAD2Q8WXG1 361 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 SPATA33Q96N06 139 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 TCF25Q9BQ70 676 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 SMG5Q9UPR3 1016 aaKnown RBP16.16■□□□□ 0.18
PTCH1-217ENST00000548420 PCDHB12Q9Y5F1 795 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 MRVI1Q9Y6F6 885 aa16.16■□□□□ 0.18
PTCH1-217ENST00000548420 SPTLC1O15269 473 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 TRDNQ13061 729 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 CCDC96Q2M329 555 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 COLGALT1Q8NBJ5 622 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 PNMA1Q8ND90 353 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 SIT1Q9Y3P8 196 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 DSPP15924 2871 aaKnown RBP16.15■□□□□ 0.18
PTCH1-217ENST00000548420 UNC79Q9P2D8 2635 aa16.15■□□□□ 0.18
PTCH1-217ENST00000548420 CDC45O75419 566 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 LGALS2P05162 132 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 CD52P31358 61 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 GPATCH4Q5T3I0 446 aaKnown RBP16.14■□□□□ 0.17
PTCH1-217ENST00000548420 THNSL1Q8IYQ7 743 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 NCOA7Q8NI08 942 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 LMBR1Q8WVP7 490 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 MRPS27Q92552 414 aaKnown RBP16.14■□□□□ 0.17
PTCH1-217ENST00000548420 EPC1Q9H2F5 836 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 NAV2Q8IVL1 2488 aa16.14■□□□□ 0.17
PTCH1-217ENST00000548420 FRMPD2Q68DX3 1309 aaPredicted RBP16.14■□□□□ 0.17
PTCH1-217ENST00000548420 HELZ2Q9BYK8 2649 aaKnown RBP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 SLC27A2O14975 620 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 LILRB5O75023 590 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 CLASP2O75122 1294 aaKnown RBP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 GGPS1O95749 300 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 ZNF528Q3MIS6 628 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 ATAT1Q5SQI0 421 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 MB21D2Q8IYB1 491 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 ZBTB44Q8NCP5 570 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 RGS22Q8NE09 1264 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 NETO1Q8TDF5 533 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 NSUN6Q8TEA1 469 aaKnown RBP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 GPKOWQ92917 476 aaPredicted RBP eCLIP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 UBAC1Q9BSL1 405 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 CWH43Q9H720 699 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 KAT14Q9H8E8 782 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 GPCPD1Q9NPB8 672 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 ENTPD7Q9NQZ7 604 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 TYW1Q9NV66 732 aaKnown RBP16.13■□□□□ 0.17
PTCH1-217ENST00000548420 LZTS1Q9Y250 596 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 TELO2Q9Y4R8 837 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 LOXHD1Q8IVV2 1947 aa16.13■□□□□ 0.17
PTCH1-217ENST00000548420 COL4A3Q01955 1670 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 EIF3JO75822 258 aaKnown RBP16.12■□□□□ 0.17
PTCH1-217ENST00000548420 KCNA4P22459 653 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 ANTXR2P58335 489 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 RING1Q06587 406 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 SPEM2Q0P670 501 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 SPOUT1Q5T280 376 aaKnown RBP16.12■□□□□ 0.17
PTCH1-217ENST00000548420 CREB3L3Q68CJ9 461 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 PHLDB3Q6NSJ2 640 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 XRRA1Q6P2D8 792 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 TSHZ1Q6ZSZ6 1077 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 IGDCC4Q8TDY8 1250 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 IWS1Q96ST2 819 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 RMDN3Q96TC7 470 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 MTA3Q9BTC8 594 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 FOXQ1Q9C009 403 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 ANO2Q9NQ90 1003 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 PATJQ8NI35 1801 aa16.12■□□□□ 0.17
PTCH1-217ENST00000548420 KAT6AQ92794 2004 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 N4BP1O75113 896 aaKnown RBP16.11■□□□□ 0.17
PTCH1-217ENST00000548420 STAG3L1P0CL83 205 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 SCG2P13521 617 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 EIF2AK2P19525 551 aaKnown RBP16.11■□□□□ 0.17
PTCH1-217ENST00000548420 ARHGAP4P98171 946 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 PLCB3Q01970 1234 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 TSGA10IPQ3SY00 556 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 USH1GQ495M9 461 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 IFIT1BQ5T764 474 aaKnown RBP16.11■□□□□ 0.17
PTCH1-217ENST00000548420 FAM102BQ5T8I3 360 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 CASC1Q6TDU7 716 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 TRIM50Q86XT4 487 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 KDF1Q8NAX2 398 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-217ENST00000548420 NGRNQ9NPE2 291 aaKnown RBP16.11■□□□□ 0.17
PTCH1-217ENST00000548420 CDY2AQ9Y6F7 541 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 WDR19Q8NEZ3 1342 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 C2orf16Q68DN1 1984 aa16.11■□□□□ 0.17
PTCH1-217ENST00000548420 C2orf71A6NGG8 1288 aa16.1■□□□□ 0.17
PTCH1-217ENST00000548420 IFIT3O14879 490 aaKnown RBP16.1■□□□□ 0.17
PTCH1-217ENST00000548420 GDF9O60383 454 aa16.1■□□□□ 0.17
PTCH1-217ENST00000548420 NR3C2P08235 984 aa16.1■□□□□ 0.17
PTCH1-217ENST00000548420 IBSPP21815 317 aaPredicted RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms