RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 KCNA3P22001 575 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 VHLP40337 213 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 KRT81Q14533 505 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 RBM41Q96IZ5 413 aaKnown RBP13.74□□□□□ -0.21
PTCH1-212ENST00000546744 ARHGAP26Q9UNA1 814 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 TRAF3IP3Q9Y228 551 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 AKAP12Q02952 1782 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 CHD2O14647 1828 aaKnown RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 KLRF2D3W0D1 207 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 ARHGEF9O43307 516 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 PCCAP05165 728 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 SLC1A4P43007 532 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 CYP2J2P51589 502 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 SLC44A4Q53GD3 710 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 DDX25Q9UHL0 483 aaKnown RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 RAB21Q9UL25 225 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 USP42Q9H9J4 1324 aaKnown RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 O00370 1275 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 ATP1A1P05023 1023 aaKnown RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 KRT10P13645 584 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 YTHDF3Q7Z739 585 aaKnown RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 GUF1Q8N442 669 aaKnown RBP13.73□□□□□ -0.21
PTCH1-212ENST00000546744 NSMCE1Q8WV22 266 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 FAM89AQ96GI7 184 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 HINFPQ9BQA5 517 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 GPCPD1Q9NPB8 672 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 SGK1O00141 431 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 CPP00450 1065 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 MARK3P27448 753 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 SERPINB10P48595 397 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 NR1I3Q14994 352 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 TC2NQ8N9U0 490 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 TEKT4Q8WW24 435 aa13.73□□□□□ -0.21
PTCH1-212ENST00000546744 WDR17Q8IZU2 1322 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 COPEO14579 308 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 GAS7O60861 476 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 SRGAP2O75044 1071 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 DEAF1O75398 565 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 ACBD5Q5T8D3 534 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 BZW1Q7L1Q6 419 aaKnown RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 TRMT1LQ7Z2T5 733 aaKnown RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 ZNF354CQ86Y25 554 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 AP1M1Q9BXS5 423 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 GCNT4Q9P109 453 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 ADD3Q9UEY8 706 aaKnown RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 SNX24Q9Y343 169 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 TNNI1P19237 187 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 GPATCH4Q5T3I0 446 aaKnown RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 TMEM154Q6P9G4 183 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 FAM212AQ96EL1 285 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 EYA3Q99504 573 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 WNT8AQ9H1J5 351 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 AZI2Q9H6S1 392 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 EMILIN3Q9NT22 766 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 EHD2Q9NZN4 543 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 RGPD8O14715 1765 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 PLEKHG2Q9H7P9 1386 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 A0A087WWV3 80 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 A0A0G2JND7 137 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 USP17L12C9JPN9 530 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 USP17L21D6R901 530 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 ACSL3O95573 720 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 KCNA4P22459 653 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 ADD2P35612 726 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 HSPA13P48723 471 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 ASPRV1Q53RT3 343 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 POTEAQ6S8J7 498 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 RASSF3Q86WH2 238 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 MYCBPAPQ8TBZ2 947 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 MAML1Q92585 1016 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 PSTPIP2Q9H939 334 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 IPO11Q9UI26 975 aaKnown RBP13.72□□□□□ -0.21
PTCH1-212ENST00000546744 PCDHB6Q9Y5E3 794 aa13.72□□□□□ -0.21
PTCH1-212ENST00000546744 TJP3O95049 919 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 DDI1Q8WTU0 396 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 MMS19Q96T76 1030 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 ZFATQ9P243 1243 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 EEF1B2P24534 225 aaKnown RBP13.71□□□□□ -0.21
PTCH1-212ENST00000546744 TMED10P49755 219 aaKnown RBP13.71□□□□□ -0.21
PTCH1-212ENST00000546744 TMPRSS15P98073 1019 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 MFN1Q8IWA4 741 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 LRRC1Q9BTT6 524 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 ISCUQ9H1K1 167 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 EPC1Q9H2F5 836 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 A0A1W2PQJ5 194 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 GOLGA8CPA6NN73 597 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 DTNBO60941 627 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 APOA1P02647 267 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 PLS3P13797 630 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 GRAMD1CQ8IYS0 662 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 TMCO5AQ8N6Q1 288 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 FAM161BQ96MY7 647 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 CYTH2Q99418 400 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 ZC3H12CQ9C0D7 883 aaKnown RBP13.71□□□□□ -0.21
PTCH1-212ENST00000546744 TBK1Q9UHD2 729 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 AFG3L2Q9Y4W6 797 aa13.71□□□□□ -0.21
PTCH1-212ENST00000546744 KPNA7A9QM74 516 aa13.71□□□□□ -0.22
PTCH1-212ENST00000546744 TBCCQ15814 346 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms