RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 CAPZA3Q96KX2 299 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 ALDH8A1Q9H2A2 487 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 BLZF1Q9H2G9 400 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 NRAPQ86VF7 1730 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 GAKO14976 1311 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 PNMA6FA0A0J9YX94 578 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 FAM205CA6NFA0 338 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 WDR64B1ANS9 1081 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 PIK3CAP42336 1068 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 MRRFQ96E11 262 aaKnown RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 PANK4Q9NVE7 773 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 FBXO28Q9NVF7 368 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 TMEM260Q9NX78 707 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 ASIC3Q9UHC3 531 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 FHOD1Q9Y613 1164 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 NEMP1O14524 444 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 PDHBP11177 359 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 PFKFB3Q16875 520 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 CC2D1AQ6P1N0 951 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 HDXQ7Z353 690 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 THEM5Q8N1Q8 247 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC26Q8TAB7 109 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 GDAP1Q8TB36 358 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 MTA3Q9BTC8 594 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 FOXP1Q9H334 677 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 ACAD9Q9H845 621 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 IL17RBQ9NRM6 502 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 MRFAP1Q9Y605 127 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 A0A087WWV3 80 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 FOXP2O15409 715 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 STAM2O75886 525 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 UPP2O95045 317 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 FDX1P10109 184 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 SHMT1P34896 483 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 NNMTP40261 264 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 MAGEA1P43355 309 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 NBPF20Q3BBV1 942 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 SCN4BQ8IWT1 228 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 IGSF22Q8N9C0 903 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 GLT1D1Q96MS3 346 aa9.32□□□□□ -0.92
CLIP1-218ENST00000545889 METTL14Q9HCE5 456 aaKnown RBP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.32□□□□□ -0.92
CLIP1-218ENST00000545889 CICQ96RK0 1608 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 CETPP11597 493 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 EPHX2P34913 555 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 EPHB1P54762 984 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 ZNF543Q08ER8 600 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 SHROOM1Q2M3G4 852 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 THNSL1Q8IYQ7 743 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 SIX6OS1Q8N1H7 587 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 HAUS1Q96CS2 278 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 RPF1Q9H9Y2 349 aaKnown RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 SYNRGQ9UMZ2 1314 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 FAM170AA1A519 330 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 ADM5C9JUS6 153 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 IRF6O14896 467 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 ZBTB5O15062 677 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 DYNC1LI2O43237 492 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 VIMP08670 466 aaKnown RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 PFKFB1P16118 471 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 VAV2P52735 878 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 PTK2Q05397 1052 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 KARSQ15046 597 aaKnown RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 SEC23AQ15436 765 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC6Q16204 474 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 ANKRD13AQ8IZ07 590 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 RPUSD2Q8IZ73 545 aaKnown RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 SPDYE1Q8NFV5 336 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 TRPM4Q8TD43 1214 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 TCP11Q8WWU5 503 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 IFT81Q8WYA0 676 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 FAM207AQ9NSI2 230 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 FEM1BQ9UK73 627 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 A6NJR5 290 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 GOLGA8CPA6NN73 597 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 GOLGA8FQ08AF8 430 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 GOLGA8DPQ0D2H9 430 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 E2F5Q15329 346 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 CEP128Q6ZU80 1094 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 DCAF4Q8WV16 495 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 NUP58Q9BVL2 599 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 KCNK9Q9NPC2 374 aa9.31□□□□□ -0.92
CLIP1-218ENST00000545889 G3BP2Q9UN86 482 aaKnown RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 ASTN2O75129 1339 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-218ENST00000545889 AKR1B15C9JRZ8 316 aaPredicted RBP9.3□□□□□ -0.92
CLIP1-218ENST00000545889 ACTN4O43707 911 aaKnown RBP9.3□□□□□ -0.92
CLIP1-218ENST00000545889 ACTN1P12814 892 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 PAX7P23759 505 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 BPIFB4P59827 614 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 VEPH1Q14D04 833 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 AFAP1L2Q8N4X5 818 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 AFAP1L1Q8TED9 768 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 NUDT12Q9BQG2 462 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 TAB2Q9NYJ8 693 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 SEPT10Q9P0V9 454 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 SERTAD1Q9UHV2 236 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 ZNF541Q9H0D2 1346 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 hCG_1984214I3L0E3 225 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 ABCD1P33897 745 aa9.3□□□□□ -0.92
CLIP1-218ENST00000545889 NDUFA8P51970 172 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms