RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 PPIGQ13427 754 aaKnown RBP eCLIP8.83□□□□□ -1
SNHG1-223ENST00000545440 SHHQ15465 462 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 ADCK5Q3MIX3 580 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 WDR44Q5JSH3 913 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 C9orf50Q5SZB4 431 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 ALKBH2Q6NS38 261 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 NFRKBQ6P4R8 1299 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 SYNE3Q6ZMZ3 975 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 VSIG10LQ86VR7 867 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 TEX2Q8IWB9 1127 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 TMEM199Q8N511 208 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 SRBD1Q8N5C6 995 aaKnown RBP8.83□□□□□ -1
SNHG1-223ENST00000545440 FANCBQ8NB91 859 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 IL31RAQ8NI17 732 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 PPTC7Q8NI37 304 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 HELQQ8TDG4 1101 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 PIBF1Q8WXW3 757 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 COPS5Q92905 334 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 CUL5Q93034 780 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 RNPC3Q96LT9 517 aaKnown RBP8.83□□□□□ -1
SNHG1-223ENST00000545440 ALDH8A1Q9H2A2 487 aaPredicted RBP8.83□□□□□ -1
SNHG1-223ENST00000545440 HIPK3Q9H422 1215 aa8.83□□□□□ -1
SNHG1-223ENST00000545440 CDH23Q9H251 3354 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 hCG_1984214I3L0E3 225 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 ZBTB43O43298 467 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 SUPT20HL2P0C7V6 817 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 MYCLP12524 364 aaPredicted RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 HOXD8P13378 290 aaPredicted RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 UBA1P22314 1058 aaKnown RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 EPHB4P54760 987 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 LAMC2Q13753 1193 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 RTN1Q16799 776 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 LY6KQ17RY6 165 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 GNPTABQ3T906 1256 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 FAM109BQ6ICB4 259 aaPredicted RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 PSRC1Q6PGN9 363 aaPredicted RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 PRICKLE2Q7Z3G6 844 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 SESTD1Q86VW0 696 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 FCHSD1Q86WN1 690 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 FBXL16Q8N461 479 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 ZNF713Q8N859 430 aaPredicted RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 TTC16Q8NEE8 873 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 SMARCC2Q8TAQ2 1214 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 AFG1LQ8WV93 481 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 TCEANC2Q96MN5 208 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 NOC4LQ9BVI4 516 aaKnown RBP8.82□□□□□ -1
SNHG1-223ENST00000545440 KATNAL1Q9BW62 490 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 SEPT3Q9UH03 358 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 HCN4Q9Y3Q4 1203 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 NLRC5Q86WI3 1866 aa8.82□□□□□ -1
SNHG1-223ENST00000545440 EVPLQ92817 2033 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 SPATA31C2B4DYI2 1134 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 MEIS2O14770 477 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 ICMTO60725 284 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 F2P00734 622 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 CSF2RAP15509 400 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 CASTP20810 708 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 BRD2P25440 801 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 ICAM3P32942 547 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 CTSOP43234 321 aaPredicted RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 SMAD3P84022 425 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 ZNF211Q13398 564 aaPredicted RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 DGKDQ16760 1214 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 FAM47CQ5HY64 1035 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 CELF3Q5SZQ8 465 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 PCNX4Q63HM2 1172 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 XRRA1Q6P2D8 792 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 BLOC1S2Q6QNY1 142 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 RAB11FIP4Q86YS3 637 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 CMTR1Q8N1G2 835 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 JAKMIP1Q96N16 626 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 INPP4AQ96PE3 977 aaPredicted RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 AGXT2Q9BYV1 514 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 IRX2Q9BZI1 471 aaPredicted RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 TRPV6Q9H1D0 765 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 WNT8AQ9H1J5 351 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 TRMT13Q9NUP7 481 aaKnown RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 PPP4R2Q9NY27 417 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 BRPF3Q9ULD4 1205 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 SNX14Q9Y5W7 946 aa8.81□□□□□ -1
SNHG1-223ENST00000545440 COL4A4P53420 1690 aaPredicted RBP8.81□□□□□ -1
SNHG1-223ENST00000545440 TMEM265A0A087WTH1 108 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 KLF18A0A0U1RQI7 1052 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 CCDC196A0A1B0GTZ2 297 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 GOLGA8AA7E2F4 631 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 GOLGA8BA8MQT2 603 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 FIBPO43427 364 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 MAN1A2O60476 641 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 GGPS1O95749 300 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 PFKMP08237 780 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 PSMA5P28066 241 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 CYP2C18P33260 490 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 PHKA2P46019 1235 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 MRPS9P82933 396 aaKnown RBP8.8□□□□□ -1
SNHG1-223ENST00000545440 FGD1P98174 961 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.8□□□□□ -1
SNHG1-223ENST00000545440 RASIP1Q5U651 963 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 USP17L6PQ6QN14 398 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 HEATR3Q7Z4Q2 680 aa8.8□□□□□ -1
SNHG1-223ENST00000545440 DHX37Q8IY37 1157 aaKnown RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms