RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 A0A0G2JND7 137 aa15.36■□□□□ 0.05
LIMS1-215ENST00000544547 LONRF1Q17RB8 773 aa15.36■□□□□ 0.05
LIMS1-215ENST00000544547 CAVIN3Q969G5 261 aa15.36■□□□□ 0.05
LIMS1-215ENST00000544547 TMOD4Q9NZQ9 345 aa15.36■□□□□ 0.05
LIMS1-215ENST00000544547 LARSQ9P2J5 1176 aaKnown RBP15.36■□□□□ 0.05
LIMS1-215ENST00000544547 MCM8Q9UJA3 840 aa15.36■□□□□ 0.05
LIMS1-215ENST00000544547 PPP1R9AQ9ULJ8 1098 aa15.36■□□□□ 0.05
LIMS1-215ENST00000544547 FRMPD2Q68DX3 1309 aaPredicted RBP15.36■□□□□ 0.05
LIMS1-215ENST00000544547 NQO1P15559 274 aaKnown RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 IL6STP40189 918 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 SLC29A2Q14542 456 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 TRADDQ15628 312 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 AK8Q96MA6 479 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 TRIM9Q9C026 710 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 PAPOLBQ9NRJ5 636 aaKnown RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 GCNT4Q9P109 453 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 C15orf41Q9Y2V0 281 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 REXO2Q9Y3B8 237 aaKnown RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 LRRC63Q05C16 580 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 PABPC4Q13310 644 aaKnown RBP eCLIP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 HP1BP3Q5SSJ5 553 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 MAGEF1Q9HAY2 307 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 CLEC11AQ9Y240 323 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 ECEL1O95672 775 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 AFPP02771 609 aaKnown RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 SGO2Q562F6 1265 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 HIPK4Q8NE63 616 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 GSDMBQ8TAX9 411 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 GLG1Q92896 1179 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 EMILIN3Q9NT22 766 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 UPP2O95045 317 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 ELF3P78545 371 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 CUL3Q13618 768 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 NTRK3Q16288 839 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 EARS2Q5JPH6 523 aaKnown RBP15.35■□□□□ 0.05
LIMS1-215ENST00000544547 AGBL2Q5U5Z8 902 aa15.35■□□□□ 0.05
LIMS1-215ENST00000544547 RASA4BC9J798 803 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 RASA4O43374 803 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 CCNHP51946 323 aaPredicted RBP15.34■□□□□ 0.05
LIMS1-215ENST00000544547 KCNH2Q12809 1159 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 PSMD6Q15008 389 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 SDCCAG8Q86SQ7 713 aaPredicted RBP15.34■□□□□ 0.05
LIMS1-215ENST00000544547 PARD3BQ8TEW8 1205 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 TLR10Q9BXR5 811 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 PACSIN1Q9BY11 444 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 ARL2BPQ9Y2Y0 163 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 AGLP35573 1532 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 GRM1Q13255 1194 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 ALX1Q15699 326 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 ELOA2Q8IYF1 753 aaPredicted RBP15.34■□□□□ 0.05
LIMS1-215ENST00000544547 ERP27Q96DN0 273 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 GYG2O15488 501 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 SPAG7O75391 227 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 BCRP11274 1271 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 PRDX5P30044 214 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 SLC18A3Q16572 532 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 NT5DC1Q5TFE4 455 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 ANKS1AQ92625 1134 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 TTC1Q99614 292 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 ZFATQ9P243 1243 aa15.34■□□□□ 0.05
LIMS1-215ENST00000544547 LOC102724428A0A0B4J2F2 783 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 ACTN1P12814 892 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 SERPINB6P35237 376 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 SIK1P57059 783 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 ERFEQ4G0M1 354 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 SH2D4BQ5SQS7 431 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 PHF20Q9BVI0 1012 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 ANAPC5Q9UJX4 755 aa15.33■□□□□ 0.05
LIMS1-215ENST00000544547 A0A087X0T9 212 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 MEIS1O00470 390 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 CSF1RP07333 972 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 FAM228BP0C875 321 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 TRIM28Q13263 835 aaKnown RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 KAZNQ674X7 775 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 CTAGE3PQ8IX95 158 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 SRBD1Q8N5C6 995 aaKnown RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 AGAP11Q8TF27 550 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 SLC4A7Q9Y6M7 1214 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 SPATA31A3Q5VYP0 1347 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 ESRRAP11474 423 aaPredicted RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 FERP16591 822 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 SERPINB4P48594 390 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 DDR1Q08345 913 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 PPP1R21Q6ZMI0 780 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 NAF1Q96HR8 494 aaKnown RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 CDCA7Q9BWT1 371 aaPredicted RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 GGA1Q9UJY5 639 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 EXOC1LA0A1B0GW35 172 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 PAPOLAP51003 745 aaKnown RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 MECOMQ03112 1051 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 CLUL1Q15846 466 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 RCSD1Q6JBY9 416 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 WDR59Q6PJI9 974 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 USP17L2Q6R6M4 530 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 GIMAP8Q8ND71 665 aaPredicted RBP15.33■□□□□ 0.04
LIMS1-215ENST00000544547 DNAJC9Q8WXX5 260 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 NT5C3AQ9H0P0 336 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 TMEM60Q9H2L4 133 aa15.33■□□□□ 0.04
LIMS1-215ENST00000544547 SLITRK6Q9H5Y7 841 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms