RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CACNB1Q02641 598 aaPredicted RBP19.65■□□□□ 0.74
CLIP1-215ENST00000541108 KIF22Q14807 665 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 HPS3Q969F9 1004 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 NIFKQ9BYG3 293 aaKnown RBP19.65■□□□□ 0.74
CLIP1-215ENST00000541108 FANCLQ9NW38 375 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 CTNND2Q9UQB3 1225 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 EMSYQ7Z589 1322 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 DGAT1O75907 488 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 TBC1D8O95759 1140 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 OATP04181 439 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 ATP4AP20648 1035 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 CCNE1P24864 410 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 CCDC144BQ3MJ40 725 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 COPS5Q92905 334 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 FAM167AQ96KS9 214 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 CEP170P1Q96L14 293 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 TRIM47Q96LD4 638 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 ZHX3Q9H4I2 956 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 CYP26B1Q9NR63 512 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 NRBP2Q9NSY0 501 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 RNF186Q9NXI6 227 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 FLRT1Q9NZU1 646 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 PPME1Q9Y570 386 aa19.65■□□□□ 0.74
CLIP1-215ENST00000541108 ECM2O94769 699 aaPredicted RBP19.64■□□□□ 0.73
CLIP1-215ENST00000541108 PLCB2Q00722 1185 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 CCDC173Q0VFZ6 552 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 CENPPQ6IPU0 288 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 TRMT44Q8IYL2 757 aaKnown RBP19.64■□□□□ 0.73
CLIP1-215ENST00000541108 MYOCDQ8IZQ8 938 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 PPTC7Q8NI37 304 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 P2RX5Q93086 422 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 SMARCAD1Q9H4L7 1026 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 LARSQ9P2J5 1176 aaKnown RBP19.64■□□□□ 0.73
CLIP1-215ENST00000541108 NRBP1Q9UHY1 535 aa19.64■□□□□ 0.73
CLIP1-215ENST00000541108 ZHX1Q9UKY1 873 aaPredicted RBP19.64■□□□□ 0.73
CLIP1-215ENST00000541108 RSPH10B2B2RC85 870 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 PPFIA4O75335 1185 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 TRPA1O75762 1119 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 RSPH10BP0C881 870 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 ZNF865P0CJ78 1059 aaPredicted RBP19.63■□□□□ 0.73
CLIP1-215ENST00000541108 ZNF18P17022 549 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 SMPD1P17405 629 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 NPEPPSP55786 919 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 STX17P56962 302 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 TMEM63BQ5T3F8 832 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 PLA2G4FQ68DD2 849 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 SFR1Q86XK3 245 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 MYCT1Q8N699 235 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 GLG1Q92896 1179 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 PDLIM2Q96JY6 352 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 DRC1Q96MC2 740 aa19.63■□□□□ 0.73
CLIP1-215ENST00000541108 SEPT9Q9UHD8 586 aaPredicted RBP19.63■□□□□ 0.73
CLIP1-215ENST00000541108 TMEM150BA6NC51 233 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 AP5Z1O43299 807 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 HIP1RO75146 1068 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 ADCY5O95622 1261 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 TNFAIP2Q03169 654 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 MAPK7Q13164 816 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 CCL14Q16627 93 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 TRMT1LQ7Z2T5 733 aaKnown RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 DAW1Q8N136 415 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 MCPH1Q8NEM0 835 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 BBXQ8WY36 941 aaPredicted RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 PPP1R9BQ96SB3 815 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 ARHGAP39Q9C0H5 1083 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 MRPL44Q9H9J2 332 aaKnown RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 C17orf75Q9HAS0 396 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 PDLIM7Q9NR12 457 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 SFI1A8K8P3 1242 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 USO1O60763 962 aaKnown RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 MAPTP10636 758 aaKnown RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 LRRC63Q05C16 580 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 TPD52L1Q16890 204 aaPredicted RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 TTI2Q6NXR4 508 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 EPM2AIP1Q7L775 607 aaPredicted RBP19.62■□□□□ 0.73
CLIP1-215ENST00000541108 TRIM5Q9C035 493 aa19.62■□□□□ 0.73
CLIP1-215ENST00000541108 CYP2C19P33261 490 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 FLT3LGP49771 235 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 ODR4Q5SWX8 454 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 STXBP4Q6ZWJ1 553 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 FAM178BQ8IXR5 827 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 SLC17A8Q8NDX2 589 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 NOC3LQ8WTT2 800 aaKnown RBP19.61■□□□□ 0.73
CLIP1-215ENST00000541108 SCFD1Q8WVM8 642 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 KIFAP3Q92845 792 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 SH2D3AQ9BRG2 576 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 TBC1D7Q9P0N9 293 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 KCNG1Q9UIX4 513 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 GNEQ9Y223 722 aaKnown RBP19.61■□□□□ 0.73
CLIP1-215ENST00000541108 Q9Y3F1 56 aa19.61■□□□□ 0.73
CLIP1-215ENST00000541108 MYH11P35749 1972 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 ARID2Q68CP9 1835 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 EIF3DO15371 548 aaKnown RBP eCLIP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 HOXD8P13378 290 aaPredicted RBP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 PLS3P13797 630 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 CDK11BP21127 795 aaKnown RBP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 HOXD10P28358 340 aa19.6■□□□□ 0.73
CLIP1-215ENST00000541108 PMS1P54277 932 aaKnown RBP19.6■□□□□ 0.73
CLIP1-215ENST00000541108 RTP1P59025 263 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms