RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 HPS3Q969F9 1004 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CEP295NLQ96MC4 621 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 RAB3IPQ96QF0 476 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 PSMB7Q99436 277 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 LRRC2Q9BYS8 371 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 IRF2BPLQ9H1B7 796 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CD2APQ9Y5K6 639 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 N4BP2Q86UW6 1770 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 KANSL1LA0AUZ9 987 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 SNX3O60493 162 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 OAS1P00973 400 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 ZCCHC18P0CG32 403 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 POTEJP0CG39 1038 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CCNB1P14635 433 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CXCR5P32302 372 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CTNNA1P35221 906 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CDK17Q00537 523 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 DIXDC1Q155Q3 683 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 ANO1Q5XXA6 986 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 OTUD7BQ6GQQ9 843 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 NFRKBQ6P4R8 1299 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 ZNF662Q6ZS27 426 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 BPHLQ86WA6 291 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 TTC5Q8N0Z6 440 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 RETREG2Q8NC44 543 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 DIS3LQ8TF46 1054 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 PURBQ96QR8 312 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 NAP1L3Q99457 506 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 SLC39A3Q9BRY0 314 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 DRC3Q9H069 523 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 TPK1Q9H3S4 243 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 TBCCD1Q9NVR7 557 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 QPCTLQ9NXS2 382 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 BTBD7Q9P203 1132 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CARD8Q9Y2G2 431 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 TBC1D30Q9Y2I9 924 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 LUC7L2Q9Y383 392 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 TTLL3Q9Y4R7 772 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 SBF2Q86WG5 1849 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 PRPF3O43395 683 aaKnown RBP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 KCNQ2O43526 872 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 GLRX3O76003 335 aaKnown RBP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 OXSR1O95747 527 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 LYNP07948 512 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 POTEIP0CG38 1075 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CHN1P15882 459 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 VHLP40337 213 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 OCRLQ01968 901 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 LRP8Q14114 963 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 TMEM259Q4ZIN3 620 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 FAM47EQ6ZV65 393 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 FAM133AQ8N9E0 248 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CASP10Q92851 521 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CGREF1Q99674 301 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CCDC28BQ9BUN5 200 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 FAIMQ9NVQ4 179 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 DACH1Q9UI36 760 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 TSC22D4Q9Y3Q8 395 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 FADS3Q9Y5Q0 445 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CARMIL3Q8ND23 1372 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 MYH2Q9UKX2 1941 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 POTEFA5A3E0 1075 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CDK7P50613 346 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 PLCD1P51178 756 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 NMIQ13287 307 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 KPNB1Q14974 876 aaKnown RBP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CCDC153Q494R4 210 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 TRIM67Q6ZTA4 783 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 G2E3Q7L622 706 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 FAM13CQ8NE31 585 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 TTC8Q8TAM2 541 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 CCT7Q99832 543 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 NCOA5Q9HCD5 579 aaKnown RBP10.23□□□□□ -0.77
CLIP1-214ENST00000540539 ASAP1Q9ULH1 1129 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 PAPPAQ13219 1627 aa10.23□□□□□ -0.77
CLIP1-214ENST00000540539 SURF6O75683 361 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 CDK4P11802 303 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 TXKP42681 527 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 MDM2Q00987 491 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 MORC3Q14149 939 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 FAM209AQ5JX71 171 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 CDKAL1Q5VV42 579 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 TMEM214Q6NUQ4 689 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 FITM2Q8N6M3 262 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 ZNF496Q96IT1 587 aaPredicted RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 DPH5Q9H2P9 285 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 MRPL46Q9H2W6 279 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 ETNK1Q9HBU6 452 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 LRRC4CQ9HCJ2 640 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 EURLQ9NYK6 297 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 HMG20BQ9P0W2 317 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 UBR2Q8IWV8 1755 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 USP42Q9H9J4 1324 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 FAM237AA0A1B0GTK4 181 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 A0A1W2PQ67 120 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 TBC1D12O60347 775 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 PABPC4LP0CB38 370 aaKnown RBP10.22□□□□□ -0.77
CLIP1-214ENST00000540539 HOXD10P28358 340 aa10.22□□□□□ -0.77
CLIP1-214ENST00000540539 TBL3Q12788 808 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms