RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 PAGR1Q9BTK6 254 aa22.14■■□□□ 1.13
TMEM260-203ENST00000539559 KLC4Q9NSK0 619 aa22.14■■□□□ 1.13
TMEM260-203ENST00000539559 CLIC2O15247 247 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 KCNA1Q09470 495 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 CUL1Q13616 776 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 EXOC3L4Q17RC7 722 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 KRT71Q3SY84 523 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 CCDC121Q6ZUS5 278 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 ACTRT1Q8TDG2 376 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 LRRC45Q96CN5 670 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 PBKQ96KB5 322 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 ARMCX3Q9UH62 379 aaPredicted RBP22.13■■□□□ 1.13
TMEM260-203ENST00000539559 TRAPPC3O43617 180 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 HOXD13P35453 343 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 MAP2K2P36507 400 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 PRPF4BQ13523 1007 aaKnown RBP22.13■■□□□ 1.13
TMEM260-203ENST00000539559 LRIG3Q6UXM1 1119 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 YTHDF3Q7Z739 585 aaKnown RBP22.13■■□□□ 1.13
TMEM260-203ENST00000539559 ATP8A1Q9Y2Q0 1164 aa22.13■■□□□ 1.13
TMEM260-203ENST00000539559 GPR75-ASB3A0A0A6YYF3 556 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 GOLGA6L7A0A1B0GV03 622 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 RSPH10B2B2RC85 870 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 F8W031 263 aaPredicted RBP22.12■■□□□ 1.13
TMEM260-203ENST00000539559 AKAP3O75969 853 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 RSPH10BP0C881 870 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 MARSP56192 900 aaKnown RBP22.12■■□□□ 1.13
TMEM260-203ENST00000539559 PPP2R2AP63151 447 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 SETQ01105 290 aaPredicted RBP22.12■■□□□ 1.13
TMEM260-203ENST00000539559 SFR1Q86XK3 245 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 GFPT2O94808 682 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 IL1R1P14778 569 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 BYSLQ13895 437 aaKnown RBP22.12■■□□□ 1.13
TMEM260-203ENST00000539559 ARHGAP27Q6ZUM4 889 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 TMC3Q7Z5M5 1100 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 ARFGAP2Q8N6H7 521 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 TBC1D16Q8TBP0 767 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 ZKSCAN4Q969J2 545 aaPredicted RBP22.12■■□□□ 1.13
TMEM260-203ENST00000539559 PSTPIP2Q9H939 334 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 HAUS2Q9NVX0 235 aa22.12■■□□□ 1.13
TMEM260-203ENST00000539559 DDX3XO00571 662 aaKnown RBP eCLIP22.11■■□□□ 1.13
TMEM260-203ENST00000539559 SMARCA1P28370 1054 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 MFSD14BQ5SR56 506 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 CUL5Q93034 780 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 SEC16BQ96JE7 1060 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 CDK5RAP2Q96SN8 1893 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 PNMA6FA0A0J9YX94 578 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 SMIM23A6NLE4 172 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 AFPP02771 609 aaKnown RBP22.11■■□□□ 1.13
TMEM260-203ENST00000539559 ABCB4P21439 1286 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 CLK2P49760 499 aaKnown RBP22.11■■□□□ 1.13
TMEM260-203ENST00000539559 SP8Q8IXZ3 490 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 POLLQ9UGP5 575 aa22.11■■□□□ 1.13
TMEM260-203ENST00000539559 PPEF1O14829 653 aaPredicted RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 RASSF9O75901 435 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 FGGP02679 453 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 TAL1P17542 331 aaPredicted RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 NT5C3AQ9H0P0 336 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 PCDHB13Q9Y5F0 798 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 SFI1A8K8P3 1242 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 C6orf229H3BNL8 230 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 SHBGP04278 402 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 SLC12A3P55017 1021 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 GSCP56915 257 aaPredicted RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 SNAP25P60880 206 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 ZNF211Q13398 564 aaPredicted RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 SEPT2Q15019 361 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 ASPRV1Q53RT3 343 aa22.1■■□□□ 1.13
TMEM260-203ENST00000539559 UBAP2Q5T6F2 1119 aaKnown RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 C1orf131Q8NDD1 294 aaKnown RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 DHX36Q9H2U1 1008 aaKnown RBP22.1■■□□□ 1.13
TMEM260-203ENST00000539559 OPLAHO14841 1288 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 H2AFZP0C0S5 128 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 XRCC5P13010 732 aaKnown RBP22.09■■□□□ 1.13
TMEM260-203ENST00000539559 CYP4A11Q02928 519 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 ZNF543Q08ER8 600 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 SLC30A10Q6XR72 485 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 H2AFVQ71UI9 128 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 NT5DC3Q86UY8 548 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 REEP2Q9BRK0 252 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 GCNT4Q9P109 453 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 IGSF9BQ9UPX0 1349 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 SMTNP53814 917 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 UHMK1Q8TAS1 419 aaKnown RBP22.09■■□□□ 1.13
TMEM260-203ENST00000539559 CXorf56Q9H5V9 222 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 GOPCQ9HD26 462 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 SIX2Q9NPC8 291 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 PNMA2Q9UL42 364 aa22.09■■□□□ 1.13
TMEM260-203ENST00000539559 MPHOSPH10O00566 681 aaKnown RBP22.08■■□□□ 1.13
TMEM260-203ENST00000539559 FLOT1O75955 427 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 GALCP54803 685 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 IFFO1Q0D2I5 559 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 GIT2Q14161 759 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 AADACL2Q6P093 401 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 FOXR2Q6PJQ5 311 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 RUFY4Q6ZNE9 571 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 CATSPER3Q86XQ3 398 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 GLG1Q92896 1179 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 PPP1R9AQ9ULJ8 1098 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 STXBP5LQ9Y2K9 1186 aa22.08■■□□□ 1.13
TMEM260-203ENST00000539559 GOLGB1Q14789 3259 aaKnown RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms