RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 HOXA7P31268 230 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 SLCO1A2P46721 670 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 CLNS1AP54105 237 aaKnown RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 GALCP54803 685 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L24Q0WX57 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L6PQ6QN14 398 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 RBM46Q8TBY0 533 aaKnown RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 CTNNBL1Q8WYA6 563 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 GLG1Q92896 1179 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 CNOT10Q9H9A5 744 aaKnown RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 LRRC4CQ9HCJ2 640 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 SAMD15Q9P1V8 674 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 TMEM110-MUSTN1A8MSY1 372 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 hCG_1984214I3L0E3 225 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 RGS16O15492 202 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 CALUO43852 315 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 GCNT3O95395 438 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 CHN1P15882 459 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 STAT1P42224 750 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 DR1Q01658 176 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 ASPRV1Q53RT3 343 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 GLYCTKQ8IVS8 523 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 ZNF713Q8N859 430 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 C3orf20Q8ND61 904 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 EDIL3O43854 480 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 TRIM37O94972 964 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 PPP4CP60510 307 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 FAM133BQ5BKY9 247 aaKnown RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 KCTD1Q719H9 257 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 ADGRF4Q8IZF3 695 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 DYDC1Q8WWB3 177 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 ELAC2Q9BQ52 826 aaKnown RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 SUCLA2Q9P2R7 463 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 NR2E1Q9Y466 385 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 TAF1P21675 1872 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 PNMA6FA0A0J9YX94 578 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 BUB1BO60566 1050 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 CYP4A11Q02928 519 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 KNOP1Q1ED39 458 aaKnown RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 EDRF1Q3B7T1 1238 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 PPP4R3CPQ6ZMV5 832 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 NT5DC3Q86UY8 548 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 DHX36Q9H2U1 1008 aaKnown RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 RTCBQ9Y3I0 505 aaKnown RBP12.23□□□□□ -0.45
SYNE1-237ENST00000539504 A0A1B0GUL6 1792 aa12.23□□□□□ -0.45
SYNE1-237ENST00000539504 BTNL10A8MVZ5 291 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 DDX3XO00571 662 aaKnown RBP eCLIP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 PPP1R12BO60237 982 aaPredicted RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 TBCAO75347 108 aaKnown RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 SHBGP04278 402 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 DRD4P21917 467 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 RPL13P26373 211 aaKnown RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 SMARCA1P28370 1054 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 CASP4P49662 377 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 EIF3BP55884 814 aaKnown RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 FRMD5Q7Z6J6 570 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 CCDC63Q8NA47 563 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 NEK9Q8TD19 979 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 RTFDC1Q9BY42 306 aaPredicted RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 AZI2Q9H6S1 392 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 JMJD4Q9H9V9 463 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 INTS9Q9NV88 658 aaKnown RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 DNM3Q9UQ16 869 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 ROBO3Q96MS0 1386 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L10C9JJH3 530 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 F8W031 263 aaPredicted RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 MED24O75448 989 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 AKAP3O75969 853 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 MARSP56192 900 aaKnown RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 NAA25Q14CX7 972 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 PRR16Q569H4 304 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 TBC1D1Q86TI0 1168 aaPredicted RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 CCDC25Q86WR0 208 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 MARCH10Q8NA82 808 aaPredicted RBP12.22□□□□□ -0.45
SYNE1-237ENST00000539504 ITGB4P16144 1822 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 AKR1B1P15121 316 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 SLC8A1P32418 973 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 PMS2P54278 862 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 NFIXQ14938 502 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 ARHGAP44Q17R89 818 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 SLC10A5Q5PT55 438 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 FOXR2Q6PJQ5 311 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 LINC00116Q8NCU8 138 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 SLC35G2Q8TBE7 412 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 MTMR4Q9NYA4 1195 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 MCM8Q9UJA3 840 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 CEP83Q9Y592 693 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 CD2APQ9Y5K6 639 aa12.22□□□□□ -0.45
SYNE1-237ENST00000539504 CCT8L1PA6NM43 557 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 CCDC169A6NNP5 214 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 SFI1A8K8P3 1242 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 NR3C1P04150 777 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 GCFC2P16383 781 aaKnown RBP12.21□□□□□ -0.45
SYNE1-237ENST00000539504 FERP16591 822 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 PLCG2P16885 1265 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 SCP2P22307 547 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 KIRREL3Q8IZU9 778 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 MGARPQ8TDB4 240 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 FAM212AQ96EL1 285 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 TMOD4Q9NZQ9 345 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms