RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GLP2RO95838 553 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 GATMP50440 423 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 RCAN1P53805 252 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 RTN1Q16799 776 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 TMEM266Q2M3C6 531 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 ODR4Q5SWX8 454 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 RNF20Q5VTR2 975 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 ALYREFQ86V81 257 aaKnown RBP15.46■□□□□ 0.07
SS18-204ENST00000539244 CCDC60Q8IWA6 550 aaPredicted RBP15.46■□□□□ 0.07
SS18-204ENST00000539244 KIAA0319LQ8IZA0 1049 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 CRYGNQ8WXF5 182 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 FBXL18Q96ME1 805 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 NEK1Q96PY6 1258 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 ANO2Q9NQ90 1003 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 RGS18Q9NS28 235 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 C1orf112Q9NSG2 853 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 BRPF3Q9ULD4 1205 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 LRFN2Q9ULH4 789 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 PCDHB7Q9Y5E2 793 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 ZBTB42B2RXF5 422 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 LOC730098B7Z3J9 87 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 ZBTB43O43298 467 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 RPS6KA5O75582 802 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 NRIP1P48552 1158 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 NHLH1Q02575 133 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 NFX1Q12986 1120 aaKnown RBP15.45■□□□□ 0.06
SS18-204ENST00000539244 CBX2Q14781 532 aaPredicted RBP15.45■□□□□ 0.06
SS18-204ENST00000539244 TSGA10IPQ3SY00 556 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 ZNF484Q5JVG2 852 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 FAM160B1Q5W0V3 765 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 SLC24A5Q71RS6 500 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 BMP8AQ7Z5Y6 402 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 TMEM40Q8WWA1 233 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 EDAQ92838 391 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 MFSD14AQ96MC6 490 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 CDHR5Q9HBB8 845 aa15.45■□□□□ 0.06
SS18-204ENST00000539244 NOC2LQ9Y3T9 749 aaKnown RBP15.45■□□□□ 0.06
SS18-204ENST00000539244 V9GY48 417 aaPredicted RBP15.45■□□□□ 0.06
SS18-204ENST00000539244 MYH9P35579 1960 aaKnown RBP15.45■□□□□ 0.06
SS18-204ENST00000539244 IGLV3-22A0A075B6J6 115 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 FSD2A1L4K1 749 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 C9IYK1 514 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 FAM86B1E9PN63 330 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 BACH1O14867 736 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 GPR182O15218 404 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 CYP3A4P08684 503 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 FAM86B2P0C5J1 330 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 ATP4AP20648 1035 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 MIS18BP1Q6P0N0 1132 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 DHX32Q7L7V1 743 aaKnown RBP15.44■□□□□ 0.06
SS18-204ENST00000539244 ADAM2Q99965 735 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 ZNF302Q9NR11 478 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 AAASQ9NRG9 546 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 FAM217BQ9NTX9 383 aaPredicted RBP15.44■□□□□ 0.06
SS18-204ENST00000539244 TMEM260Q9NX78 707 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 ST3GAL5Q9UNP4 418 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 PCDHB12Q9Y5F1 795 aa15.44■□□□□ 0.06
SS18-204ENST00000539244 ESYT2A0FGR8 921 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 IPO5O00410 1097 aaKnown RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 C22orf31O95567 290 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 ZNF76P36508 570 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 FAM189BP81408 668 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 PDE12Q6L8Q7 609 aaKnown RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 PDXDC2PQ6P474 469 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 PLA2G4DQ86XP0 818 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 BBXQ8WY36 941 aaPredicted RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 CDCA3Q99618 268 aaPredicted RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 ELAC1Q9H777 363 aaKnown RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 TLE6Q9H808 572 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 TLR9Q9NR96 1032 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 BARX2Q9UMQ3 279 aaPredicted RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 GINS2Q9Y248 185 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 PCDHGC5Q9Y5F6 944 aa15.43■□□□□ 0.06
SS18-204ENST00000539244 MAFBQ9Y5Q3 323 aaPredicted RBP15.43■□□□□ 0.06
SS18-204ENST00000539244 DENND3A2RUS2 1198 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 GOLGA8AA7E2F4 631 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 TBKBP1A7MCY6 615 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 GOLGA8BA8MQT2 603 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 DDX39AO00148 427 aaKnown RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 FSCN2O14926 492 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 GPR32O75388 356 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 FGF18O76093 207 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 ATF7P17544 494 aaPredicted RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 CDC27P30260 824 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 MRE11P49959 708 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 CRYBB1P53674 252 aaPredicted RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 SETQ01105 290 aaPredicted RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 DSC3Q14574 896 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 DUSP6Q16828 381 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 PFKFB3Q16875 520 aaPredicted RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 BMP2KLQ5H9B9 411 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 FAM102BQ5T8I3 360 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 MCTP2Q6DN12 878 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 ZNF746Q6NUN9 644 aaPredicted RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 SWSAP1Q6NVH7 229 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 TMEM184AQ6ZMB5 413 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 RBM23Q86U06 439 aaKnown RBP15.42■□□□□ 0.06
SS18-204ENST00000539244 FAM228AQ86W67 206 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 SUSD6Q92537 303 aa15.42■□□□□ 0.06
SS18-204ENST00000539244 TCEANC2Q96MN5 208 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms