RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 AGPSO00116 658 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 SLC16A3O15427 465 aaKnown RBP14.4□□□□□ -0.1
LDLR-203ENST00000535915 EPHB4P54760 987 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 TRAF1Q13077 416 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 EPHA7Q15375 998 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 KIAA1755Q5JYT7 1200 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 C10orf76Q5T2E6 689 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 ACER1Q8TDN7 264 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 HSD17B14Q9BPX1 270 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 TUFT1Q9NNX1 390 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 TMOD2Q9NZR1 351 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 GCNT4Q9P109 453 aa14.4□□□□□ -0.1
LDLR-203ENST00000535915 GRID2IPA4D2P6 1211 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 SLITRK3O94933 977 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 GLE1Q53GS7 698 aaKnown RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 SAMD1Q6SPF0 538 aaPredicted RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 RBM46Q8TBY0 533 aaKnown RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 CNKSR1Q969H4 720 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 SLC35C1Q96A29 364 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 GOPCQ9HD26 462 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 CWC15Q9P013 229 aaKnown RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 SYNPO2Q9UMS6 1093 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 COL2A1P02458 1487 aaPredicted RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 LOXHD1Q8IVV2 1947 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 CLRN2A0PK11 232 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 GCOM1H8Y6P7 765 aaPredicted RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 ZBTB39O15060 712 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 PPIP5K2O43314 1243 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 POLR2MP0CAP2 368 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 NMT1P30419 496 aaKnown RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 KCTD17Q8N5Z5 321 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 YDJCA8MPS7 323 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 PSMD10O75832 226 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 POLD1P28340 1107 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 NOP2P46087 812 aaKnown RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 RNASE9P60153 205 aaKnown RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 ZC2HC1CQ53FD0 456 aaPredicted RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 ZFP91Q96JP5 570 aaPredicted RBP14.39□□□□□ -0.11
LDLR-203ENST00000535915 IKZF4Q9H2S9 585 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 NAGPAQ9UK23 515 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 TMX2Q9Y320 296 aa14.39□□□□□ -0.11
LDLR-203ENST00000535915 PSME4Q14997 1843 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 TGFB1I1O43294 461 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 GAS7O60861 476 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 ZYXQ15942 572 aaKnown RBP14.38□□□□□ -0.11
LDLR-203ENST00000535915 ALKBH5Q6P6C2 394 aaKnown RBP14.38□□□□□ -0.11
LDLR-203ENST00000535915 EMBQ6PCB8 327 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 C1orf186Q6ZWK4 172 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 DNAAF5Q86Y56 855 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 TAF4BQ92750 862 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 PLEKHA4Q9H4M7 779 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 PARVGQ9HBI0 331 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 BTNL10A8MVZ5 291 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 EIF3DO15371 548 aaKnown RBP eCLIP14.38□□□□□ -0.11
LDLR-203ENST00000535915 PPP1R12BO60237 982 aaPredicted RBP14.38□□□□□ -0.11
LDLR-203ENST00000535915 FLOT1O75955 427 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 PRELPP51888 382 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 PPP2R5CQ13362 524 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 GJB7Q6PEY0 223 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 IFT20Q8IY31 132 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 FAM186BQ8IYM0 893 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 SLC5A5Q92911 643 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 SIX2Q9NPC8 291 aa14.38□□□□□ -0.11
LDLR-203ENST00000535915 AJAP1Q9UKB5 411 aaPredicted RBP14.38□□□□□ -0.11
LDLR-203ENST00000535915 ZMYM2Q9UBW7 1377 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 SHTN1A0MZ66 631 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 GLI1P08151 1106 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 TNFRSF8P28908 595 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 PSMC2P35998 433 aaKnown RBP14.37□□□□□ -0.11
LDLR-203ENST00000535915 PRKCIP41743 596 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 RPS6KA1Q15418 735 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 IFI16Q16666 785 aaKnown RBP14.37□□□□□ -0.11
LDLR-203ENST00000535915 VPS36Q86VN1 386 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 KRT12Q99456 494 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 GOLGA6CA6NDK9 693 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 KCNK3O14649 394 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 HEXIM1O94992 359 aaKnown RBP14.37□□□□□ -0.11
LDLR-203ENST00000535915 GOLGA6DP0CG33 693 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.37□□□□□ -0.11
LDLR-203ENST00000535915 KSR1Q8IVT5 923 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 CHURC1Q8WUH1 139 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 C7orf43Q8WVR3 580 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 INPP4AQ96PE3 977 aaPredicted RBP14.37□□□□□ -0.11
LDLR-203ENST00000535915 ZNF577Q9BSK1 485 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 EHMT1Q9H9B1 1298 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 EPB41L5Q9HCM4 733 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 GOLGA6AQ9NYA3 693 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 FBXL5Q9UKA1 691 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 ZBTB21Q9ULJ3 1066 aa14.37□□□□□ -0.11
LDLR-203ENST00000535915 GTPBP10A4D1E9 387 aaKnown RBP14.36□□□□□ -0.11
LDLR-203ENST00000535915 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 IVLP07476 585 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 JAM2P57087 298 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 GUCY2DQ02846 1103 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 COG2Q14746 738 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 SLC15A2Q16348 729 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 CEP55Q53EZ4 464 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 SUPT20HQ8NEM7 779 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 IFT81Q8WYA0 676 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms