RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 IL23AQ9NPF7 189 aa13.43□□□□□ -0.26
SSBP3-214ENST00000533209 LRWD1Q9UFC0 647 aa13.43□□□□□ -0.26
SSBP3-214ENST00000533209 COLQQ9Y215 455 aaPredicted RBP13.43□□□□□ -0.26
SSBP3-214ENST00000533209 TRIP12Q14669 1992 aaPredicted RBP13.43□□□□□ -0.26
SSBP3-214ENST00000533209 SMIM35A0A1B0GVV1 85 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 PP2D1A8MPX8 630 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 RBAK-RBAKDNI3L0D1 243 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 BRD1O95696 1058 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 ACRP10323 421 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 RPA1P27694 616 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 YWHABP31946 246 aaKnown RBP13.42□□□□□ -0.26
SSBP3-214ENST00000533209 NPEPPSP55786 919 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 MTERF2Q49AM1 385 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 FAM26DQ5JW98 314 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 CATSPER3Q86XQ3 398 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 KIAA0319LQ8IZA0 1049 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 LINC01465Q8N7H1 131 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 ZNF579Q8NAF0 562 aaKnown RBP13.42□□□□□ -0.26
SSBP3-214ENST00000533209 USP28Q96RU2 1077 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 FAM49AQ9H0Q0 323 aaPredicted RBP13.42□□□□□ -0.26
SSBP3-214ENST00000533209 TUFT1Q9NNX1 390 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 CYP26B1Q9NR63 512 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 ZDHHC9Q9Y397 364 aa13.42□□□□□ -0.26
SSBP3-214ENST00000533209 IGKV6-21A0A0C4DH24 114 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 VWA3AA6NCI4 1184 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 RSPH10B2B2RC85 870 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 MAGEB2O15479 319 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 NBNO60934 754 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 CHRNA1P02708 482 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 CTSHP09668 335 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 RSPH10BP0C881 870 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 CDC25AP30304 524 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 RFC2P35250 354 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 CEBPZQ03701 1054 aaKnown RBP13.41□□□□□ -0.26
SSBP3-214ENST00000533209 MGAT3Q09327 533 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 TBC1D8BQ0IIM8 1120 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 TMEM240Q5SV17 173 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 C9orf50Q5SZB4 431 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 OTUD6AQ7L8S5 288 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 RSPH3Q86UC2 560 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 ERMNQ8TAM6 284 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.41□□□□□ -0.265e-7■□□□□ 10.6
SSBP3-214ENST00000533209 MMTAG2Q9BU76 263 aaKnown RBP13.41□□□□□ -0.26
SSBP3-214ENST00000533209 OSBPL7Q9BZF2 842 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 RAB34Q9BZG1 259 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 WDR81Q562E7 1941 aa13.41□□□□□ -0.26
SSBP3-214ENST00000533209 MYH9P35579 1960 aaKnown RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 A0A087WWV3 80 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 MAFO75444 373 aaPredicted RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 PARNO95453 639 aaKnown RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 CXCL10P02778 98 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 RPLP2P05387 115 aaKnown RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 MUTP22033 750 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 CCT6AP40227 531 aaKnown RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 NASPP49321 788 aaPredicted RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 CLCN3P51790 818 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 MRPS6P82932 125 aaKnown RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 GRIN1Q05586 938 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 MKRN4PQ13434 485 aaPredicted RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 SLC39A14Q15043 492 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 SHHQ15465 462 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 ECM1Q16610 540 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 XKR9Q5GH70 373 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 HAUS3Q68CZ6 603 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 EFCAB12Q6NXP0 572 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 POTEGQ6S5H5 508 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 ZNF365Q70YC5 407 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 DEFB128Q7Z7B8 93 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 RPUSD2Q8IZ73 545 aaKnown RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 NME8Q8N427 588 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 LRRC71Q8N4P6 559 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 METTL13Q8N6R0 699 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 SNX29Q8TEQ0 813 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 PIGOQ8TEQ8 1089 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 CEP170P1Q96L14 293 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 ANKEF1Q9NU02 776 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 PPME1Q9Y570 386 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 STK24Q9Y6E0 443 aa13.4□□□□□ -0.26
SSBP3-214ENST00000533209 MORC2Q9Y6X9 1032 aaPredicted RBP13.4□□□□□ -0.26
SSBP3-214ENST00000533209 KAT6AQ92794 2004 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 VTNP04004 478 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 PFKMP08237 780 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 XRCC6P12956 609 aaKnown RBP eCLIP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 MARCKSP29966 332 aaPredicted RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 DDIT3P35638 169 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 RARRES1P49788 294 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 TMEM62Q0P6H9 643 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 DRP2Q13474 957 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 FOXD4L6Q3SYB3 417 aaPredicted RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 IER5Q5VY09 327 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 KRT79Q5XKE5 535 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 FOXD4L3Q6VB84 417 aaPredicted RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 TDHQ8IZJ6 230 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 ZNF396Q96N95 335 aaPredicted RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 NACC1Q96RE7 527 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 DHX33Q9H6R0 707 aaKnown RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 TFIP11Q9UBB9 837 aaKnown RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 FBXO2Q9UK22 296 aaPredicted RBP13.39□□□□□ -0.27
SSBP3-214ENST00000533209 CDY2AQ9Y6F7 541 aa13.39□□□□□ -0.27
SSBP3-214ENST00000533209 TRIOBPQ9H2D6 2365 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms