RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SEPT9Q9UHD8 586 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-208ENST00000532560 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-208ENST00000532560 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-208ENST00000532560 ZBBXA8MT70 800 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 M0QZ92 97 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 NBR1Q14596 966 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 TARBP2Q15633 366 aaKnown RBP16.87■□□□□ 0.29
CPSF1-208ENST00000532560 PLEKHG4Q58EX7 1191 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 IER5Q5VY09 327 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 C4orf19Q8IY42 314 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 KIAA0319LQ8IZA0 1049 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 LINC01465Q8N7H1 131 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 WRAP73Q9P2S5 460 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-208ENST00000532560 TRPV2Q9Y5S1 764 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 CDY2AQ9Y6F7 541 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 SLC4A7Q9Y6M7 1214 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 KDM3AQ9Y4C1 1321 aa16.87■□□□□ 0.29
CPSF1-208ENST00000532560 ABHD14A-ACY1A0A1B0GW23 586 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 POTEMA6NI47 508 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 EFCAB14O75071 495 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 TBC1D8BQ0IIM8 1120 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 TCTN1Q2MV58 587 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 FAM109BQ6ICB4 259 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-208ENST00000532560 ANO5Q75V66 913 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 C4orf32Q8N8J7 132 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 SEPT8Q92599 483 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 APBB2Q92870 758 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 DYDC2Q96IM9 177 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 CEP89Q96ST8 783 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 SLC9A7Q96T83 725 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 EIF2AK1Q9BQI3 630 aaKnown RBP16.86■□□□□ 0.29
CPSF1-208ENST00000532560 ZSWIM4Q9H7M6 989 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 RGL1Q9NZL6 768 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 PPME1Q9Y570 386 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 PCDHB6Q9Y5E3 794 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 SQORQ9Y6N5 450 aa16.86■□□□□ 0.29
CPSF1-208ENST00000532560 TMEM150BA6NC51 233 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 LAD1O00515 517 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 LYPLA2O95372 231 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 CYP4A11Q02928 519 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 MKRN4PQ13434 485 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-208ENST00000532560 MTERF2Q49AM1 385 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 FBXO47Q5MNV8 452 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 BRAPQ7Z569 592 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 METTL13Q8N6R0 699 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 DBF4BQ8NFT6 615 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 PHOSPHO2Q8TCD6 241 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 HSD17B14Q9BPX1 270 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 IFIH1Q9BYX4 1025 aaKnown RBP16.85■□□□□ 0.29
CPSF1-208ENST00000532560 OSBPL7Q9BZF2 842 aa16.85■□□□□ 0.29
CPSF1-208ENST00000532560 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.85■□□□□ 0.29
CPSF1-208ENST00000532560 MICAL3Q7RTP6 2002 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 EVPLQ92817 2033 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 IGKV6-21A0A0C4DH24 114 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 VPS37CA5D8V6 355 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-208ENST00000532560 DDX11L8A8MPP1 907 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 SLITRK3O94933 977 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 GHRP10912 638 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 ATP2A2P16615 1042 aaKnown RBP16.84■□□□□ 0.29
CPSF1-208ENST00000532560 SYT1P21579 422 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 TMOD1P28289 359 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 YWHABP31946 246 aaKnown RBP16.84■□□□□ 0.29
CPSF1-208ENST00000532560 PRPHP41219 470 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 KCNJ6P48051 423 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 FXR2P51116 673 aaKnown RBP eCLIP16.84■□□□□ 0.292e-8■■■□□ 17.9
CPSF1-208ENST00000532560 CLCN3P51790 818 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 WDR5P61964 334 aaKnown RBP16.84■□□□□ 0.29
CPSF1-208ENST00000532560 TMEM62Q0P6H9 643 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 PTGDRQ13258 359 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 IKBKEQ14164 716 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 CTTNQ14247 550 aaKnown RBP16.84■□□□□ 0.29
CPSF1-208ENST00000532560 LPIN1Q14693 890 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 TMEM266Q2M3C6 531 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 PLA2G4FQ68DD2 849 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 TSHZ1Q6ZSZ6 1077 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 ZNF710Q8N1W2 664 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 USP38Q8NB14 1042 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 MAP7D2Q96T17 732 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 CELF4Q9BZC1 486 aaKnown RBP16.84■□□□□ 0.29
CPSF1-208ENST00000532560 CYP26B1Q9NR63 512 aa16.84■□□□□ 0.29
CPSF1-208ENST00000532560 TMEM265A0A087WTH1 108 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 TECP42680 631 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 ARID2Q68CP9 1835 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 EFCAB12Q6NXP0 572 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 TPH2Q8IWU9 490 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 LRRC71Q8N4P6 559 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 ERMNQ8TAM6 284 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 JPH2Q9BR39 696 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-208ENST00000532560 PBX4Q9BYU1 374 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 FOXD4L1Q9NU39 408 aa16.83■□□□□ 0.28
CPSF1-208ENST00000532560 PTPRSQ13332 1948 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 LAMA2P24043 3122 aaKnown RBP16.82■□□□□ 0.28
CPSF1-208ENST00000532560 GRXCR1A8MXD5 290 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 MAFO75444 373 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-208ENST00000532560 DNAJB2P25686 324 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 ATP2C1P98194 919 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-208ENST00000532560 RAB30Q15771 203 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 OTUD6AQ7L8S5 288 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 EXOC8Q8IYI6 725 aa16.82■□□□□ 0.28
CPSF1-208ENST00000532560 CEP170P1Q96L14 293 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms