RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 KCTD17Q8N5Z5 321 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 FOXD4L4Q8WXT5 416 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-206ENST00000531480 HIPK3Q9H422 1215 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 ANKEF1Q9NU02 776 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 SMIM35A0A1B0GVV1 85 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 PPP6R2O75170 966 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 KLRC1P26715 233 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 YWHABP31946 246 aaKnown RBP16.19■□□□□ 0.18
CPSF1-206ENST00000531480 DNM1Q05193 864 aaKnown RBP16.19■□□□□ 0.18
CPSF1-206ENST00000531480 GRIN1Q05586 938 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 BFSP2Q13515 415 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 ECM1Q16610 540 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 RUFY4Q6ZNE9 571 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 TPH2Q8IWU9 490 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 TRAPPC12Q8WVT3 735 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 ZMYND8Q9ULU4 1186 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-206ENST00000531480 ATP6V1DQ9Y5K8 247 aa16.19■□□□□ 0.18
CPSF1-206ENST00000531480 TMEM150BA6NC51 233 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 PP2D1A8MPX8 630 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 ZBTB39O15060 712 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 SPTLC2O15270 562 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 MAGEB2O15479 319 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 CKBP12277 381 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 FAM26DQ5JW98 314 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 KRT79Q5XKE5 535 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 MFSD5Q6N075 450 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 CCDC155Q8N6L0 562 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 CCSER1Q9C0I3 900 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 WNT8AQ9H1J5 351 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 DHX33Q9H6R0 707 aaKnown RBP16.18■□□□□ 0.18
CPSF1-206ENST00000531480 CYP26B1Q9NR63 512 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 TFIP11Q9UBB9 837 aaKnown RBP16.18■□□□□ 0.18
CPSF1-206ENST00000531480 PRKAG2Q9UGJ0 569 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 DBR1Q9UK59 544 aaKnown RBP16.18■□□□□ 0.18
CPSF1-206ENST00000531480 RCOR1Q9UKL0 485 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 CFAP45Q9UL16 551 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 NOD1Q9Y239 953 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 UMODL1Q5DID0 1318 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 SCN5AQ14524 2016 aa16.18■□□□□ 0.18
CPSF1-206ENST00000531480 DDX11L8A8MPP1 907 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 MAFO75444 373 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 RAG1P15918 1043 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 SYN1P17600 705 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 MARCKSP29966 332 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 CDC25AP30304 524 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 RARRES1P49788 294 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 IGBP1P78318 339 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 CEBPZQ03701 1054 aaKnown RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 OTUD6AQ7L8S5 288 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 KIAA0319LQ8IZA0 1049 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 NME8Q8N427 588 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 KRI1Q8N9T8 703 aaKnown RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 ZNF579Q8NAF0 562 aaKnown RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 SNX29Q8TEQ0 813 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 VWCEQ96DN2 955 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 NACC1Q96RE7 527 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 GDF15Q99988 308 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 PRO3102Q9H379 93 aa16.17■□□□□ 0.18
CPSF1-206ENST00000531480 PRDM5Q9NQX1 630 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 SEPT9Q9UHD8 586 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 RANBP2P49792 3224 aaKnown RBP16.17■□□□□ 0.18
CPSF1-206ENST00000531480 PARNO95453 639 aaKnown RBP16.16■□□□□ 0.18
CPSF1-206ENST00000531480 IQCF3P0C7M6 154 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 SELPP16109 830 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 CYP2C18P33260 490 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 CCT6AP40227 531 aaKnown RBP16.16■□□□□ 0.18
CPSF1-206ENST00000531480 NPEPPSP55786 919 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 MGAT3Q09327 533 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 GPNMBQ14956 572 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 STK38Q15208 465 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 TMEM119Q4V9L6 283 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 AXDND1Q5T1B0 1012 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-206ENST00000531480 PLA2G4FQ68DD2 849 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 POTEGQ6S5H5 508 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 EXOC8Q8IYI6 725 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 KCNG4Q8TDN1 519 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 ZBTB10Q96DT7 871 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 PNMA5Q96PV4 448 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 NT5C3AQ9H0P0 336 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 CSRNP2Q9H175 543 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 TET1Q8NFU7 2136 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 KDM3AQ9Y4C1 1321 aa16.16■□□□□ 0.18
CPSF1-206ENST00000531480 GAS2O43903 313 aaKnown RBP16.15■□□□□ 0.18
CPSF1-206ENST00000531480 BMP8BP34820 402 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 RFC2P35250 354 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 RFC5P40937 340 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 KRT85P78386 507 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 TBC1D8BQ0IIM8 1120 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 GRB10Q13322 594 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 MKRN4PQ13434 485 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-206ENST00000531480 MTERF2Q49AM1 385 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 ZNF618Q5T7W0 954 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 LRRC8DQ7L1W4 858 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 TRMT1LQ7Z2T5 733 aaKnown RBP16.15■□□□□ 0.18
CPSF1-206ENST00000531480 ZNF710Q8N1W2 664 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 PIGOQ8TEQ8 1089 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 BADQ92934 168 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 CEP170P1Q96L14 293 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 PPP1R12CQ9BZL4 782 aa16.15■□□□□ 0.18
CPSF1-206ENST00000531480 KIAA1024Q9UPX6 916 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms