RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ALYREFQ86V81 257 aaKnown RBP26.85■■□□□ 1.89
CPSF1-202ENST00000527827 CCDC60Q8IWA6 550 aaPredicted RBP26.85■■□□□ 1.89
CPSF1-202ENST00000527827 KIAA0319LQ8IZA0 1049 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 ATP8B4Q8TF62 1192 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 TMEM40Q8WWA1 233 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 NEK1Q96PY6 1258 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 BARHL2Q9NY43 387 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 PCDHGC5Q9Y5F6 944 aa26.85■■□□□ 1.89
CPSF1-202ENST00000527827 hCG_1984214I3L0E3 225 aa26.84■■□□□ 1.89
CPSF1-202ENST00000527827 BACH1O14867 736 aa26.84■■□□□ 1.89
CPSF1-202ENST00000527827 DHX15O43143 795 aaKnown RBP26.84■■□□□ 1.89
CPSF1-202ENST00000527827 ZNF713Q8N859 430 aaPredicted RBP26.84■■□□□ 1.89
CPSF1-202ENST00000527827 FAM217BQ9NTX9 383 aaPredicted RBP26.84■■□□□ 1.89
CPSF1-202ENST00000527827 GINS2Q9Y248 185 aa26.84■■□□□ 1.89
CPSF1-202ENST00000527827 ZBTB42B2RXF5 422 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 FAM86B1E9PN63 330 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 ZBTB43O43298 467 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 GLP2RO95838 553 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 FAM86B2P0C5J1 330 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 IBSPP21815 317 aaPredicted RBP26.83■■□□□ 1.89
CPSF1-202ENST00000527827 NRIP1P48552 1158 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 COASYQ13057 564 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 FAM160B1Q5W0V3 765 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 SMRP1Q8NCR6 262 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 PCDHB7Q9Y5E2 793 aa26.83■■□□□ 1.89
CPSF1-202ENST00000527827 MYH9P35579 1960 aaKnown RBP26.83■■□□□ 1.89
CPSF1-202ENST00000527827 COL1A2P08123 1366 aa26.83■■□□□ 1.88
CPSF1-202ENST00000527827 RPS6KA5O75582 802 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 ATP4AP20648 1035 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 ZNF76P36508 570 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 RNF20Q5VTR2 975 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 FAM43BQ6ZT52 329 aaPredicted RBP26.82■■□□□ 1.88
CPSF1-202ENST00000527827 DHX32Q7L7V1 743 aaKnown RBP26.82■■□□□ 1.88
CPSF1-202ENST00000527827 RBM23Q86U06 439 aaKnown RBP26.82■■□□□ 1.88
CPSF1-202ENST00000527827 PLA2G4DQ86XP0 818 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 CRYGNQ8WXF5 182 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 FBXL18Q96ME1 805 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 ADAM2Q99965 735 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 GLT8D2Q9H1C3 349 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 KCNH6Q9H252 994 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 ZNF302Q9NR11 478 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 RGS18Q9NS28 235 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 ST3GAL5Q9UNP4 418 aa26.82■■□□□ 1.88
CPSF1-202ENST00000527827 IGLV3-22A0A075B6J6 115 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 PPFIA3O75145 1194 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 CDC27P30260 824 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 ADCK5Q3MIX3 580 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 ZNF484Q5JVG2 852 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 SWSAP1Q6NVH7 229 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 PDXDC2PQ6P474 469 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 RASEFQ8IZ41 740 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 BARX2Q9UMQ3 279 aaPredicted RBP26.81■■□□□ 1.88
CPSF1-202ENST00000527827 WDFY4Q6ZS81 3184 aa26.81■■□□□ 1.88
CPSF1-202ENST00000527827 GOLGA8AA7E2F4 631 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 TBKBP1A7MCY6 615 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 GOLGA8BA8MQT2 603 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 C9IYK1 514 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 ADAMTS3O15072 1205 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 NHLH1Q02575 133 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 FAM102BQ5T8I3 360 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 JAKMIP3Q5VZ66 844 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 SLC24A5Q71RS6 500 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 C1orf112Q9NSG2 853 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 HCSTQ9UBK5 93 aa26.8■■□□□ 1.88
CPSF1-202ENST00000527827 WDR81Q562E7 1941 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 DENND3A2RUS2 1198 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 CYP3A4P08684 503 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 TSGA10IPQ3SY00 556 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 MIS18BP1Q6P0N0 1132 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 EDAQ92838 391 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 PPP1R16BQ96T49 567 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 PCDHB12Q9Y5F1 795 aa26.79■■□□□ 1.88
CPSF1-202ENST00000527827 KLF18A0A0U1RQI7 1052 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 LOC730098B7Z3J9 87 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 IPO5O00410 1097 aaKnown RBP26.78■■□□□ 1.88
CPSF1-202ENST00000527827 GPR182O15218 404 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 C22orf31O95567 290 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 UBE3AQ05086 875 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 KIZQ2M2Z5 673 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 ODR4Q5SWX8 454 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 SPOUT1Q5T280 376 aaKnown RBP26.78■■□□□ 1.88
CPSF1-202ENST00000527827 FAM228AQ86W67 206 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 TLE6Q9H808 572 aa26.78■■□□□ 1.88
CPSF1-202ENST00000527827 USP15Q9Y4E8 981 aaPredicted RBP26.78■■□□□ 1.88
CPSF1-202ENST00000527827 PER2O15055 1255 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 FGF18O76093 207 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 CRYBB1P53674 252 aaPredicted RBP26.77■■□□□ 1.88
CPSF1-202ENST00000527827 ERVFC1P60507 584 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 FAM189BP81408 668 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 RBM10P98175 930 aaKnown RBP26.77■■□□□ 1.88
CPSF1-202ENST00000527827 PFKFB3Q16875 520 aaPredicted RBP26.77■■□□□ 1.88
CPSF1-202ENST00000527827 MICAL1Q8TDZ2 1067 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 MFSD14AQ96MC6 490 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 OSMRQ99650 979 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 TLR9Q9NR96 1032 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 AAASQ9NRG9 546 aa26.77■■□□□ 1.88
CPSF1-202ENST00000527827 TYW1Q9NV66 732 aaKnown RBP26.77■■□□□ 1.88
CPSF1-202ENST00000527827 RNF216Q9NWF9 866 aaPredicted RBP26.77■■□□□ 1.88
CPSF1-202ENST00000527827 MAFBQ9Y5Q3 323 aaPredicted RBP26.77■■□□□ 1.88
CPSF1-202ENST00000527827 GPR32O75388 356 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms