RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GCOM1H8Y6P7 765 aaPredicted RBP23.23■■□□□ 1.31
VPS28-205ENST00000526204 SLITRK3O94933 977 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 POLR2MP0CAP2 368 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 RRP1BQ14684 758 aaKnown RBP23.23■■□□□ 1.31
VPS28-205ENST00000526204 ALKBH5Q6P6C2 394 aaKnown RBP23.23■■□□□ 1.31
VPS28-205ENST00000526204 C1orf186Q6ZWK4 172 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 HINFPQ9BQA5 517 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 GDF3Q9NR23 364 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 GOLGA8KD6RF30 607 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 TGFB1I1O43294 461 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 CFBP00751 764 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 PSMC2P35998 433 aaKnown RBP23.22■■□□□ 1.31
VPS28-205ENST00000526204 JAM2P57087 298 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 CTTNQ14247 550 aaKnown RBP23.22■■□□□ 1.31
VPS28-205ENST00000526204 RPS6KA1Q15418 735 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 STXBP4Q6ZWJ1 553 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 TPH2Q8IWU9 490 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 MYCT1Q8N699 235 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 SUPT20HQ8NEM7 779 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 FAM76AQ8TAV0 307 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 SLC5A5Q92911 643 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 MKNK1Q9BUB5 465 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 WDR18Q9BV38 432 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 PARVGQ9HBI0 331 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 KCND2Q9NZV8 630 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 GCNT4Q9P109 453 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 SCN9AQ15858 1988 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 UBE4BO95155 1302 aa23.22■■□□□ 1.31
VPS28-205ENST00000526204 TAL1P17542 331 aaPredicted RBP23.21■■□□□ 1.31
VPS28-205ENST00000526204 CASP4P49662 377 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 RBM46Q8TBY0 533 aaKnown RBP23.21■■□□□ 1.31
VPS28-205ENST00000526204 PIGOQ8TEQ8 1089 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 CHURC1Q8WUH1 139 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 BORCS6Q96GS4 357 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 PBKQ96KB5 322 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 SH3GL2Q99962 352 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 SIX2Q9NPC8 291 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 INTUQ9ULD6 942 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 PCDHB13Q9Y5F0 798 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 SHTN1A0MZ66 631 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 GOLGA6CA6NDK9 693 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 TULP2O00295 520 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 GOLGA6DP0CG33 693 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 PPFIA1Q13136 1202 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 PAK2Q13177 524 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 MSL1Q68DK7 614 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 DYDC2Q96IM9 177 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 GOLGA6AQ9NYA3 693 aa23.21■■□□□ 1.31
VPS28-205ENST00000526204 ZNF219Q9P2Y4 722 aaPredicted RBP23.21■■□□□ 1.31
VPS28-205ENST00000526204 CLIC2O15247 247 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 HSF2BPO75031 334 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 GFPT2O94808 682 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 FERP16591 822 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 PRELPP51888 382 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 TNNC1P63316 161 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 MRPS25P82663 173 aaKnown RBP23.2■■□□□ 1.3
VPS28-205ENST00000526204 FAM186BQ8IYM0 893 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 USP38Q8NB14 1042 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 LMBR1Q8WVP7 490 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 NACC1Q96RE7 527 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 WDR11Q9BZH6 1224 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 MRPL11Q9Y3B7 192 aaKnown RBP23.2■■□□□ 1.3
VPS28-205ENST00000526204 A0A0A6YYK5 440 aaPredicted RBP23.2■■□□□ 1.3
VPS28-205ENST00000526204 GAS7O60861 476 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 HEXIM1O94992 359 aaKnown RBP23.2■■□□□ 1.3
VPS28-205ENST00000526204 APBA3O96018 575 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 GLI1P08151 1106 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 ECE1P42892 770 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 KCNA1Q09470 495 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 C7orf43Q8WVR3 580 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 RUFY1Q96T51 708 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 NENFQ9UMX5 172 aa23.2■■□□□ 1.3
VPS28-205ENST00000526204 NOP2P46087 812 aaKnown RBP23.19■■□□□ 1.3
VPS28-205ENST00000526204 SF3B2Q13435 895 aaKnown RBP23.19■■□□□ 1.3
VPS28-205ENST00000526204 CEP55Q53EZ4 464 aa23.19■■□□□ 1.3
VPS28-205ENST00000526204 FMNL3Q8IVF7 1028 aa23.19■■□□□ 1.3
VPS28-205ENST00000526204 RANBP17Q9H2T7 1088 aaKnown RBP23.19■■□□□ 1.3
VPS28-205ENST00000526204 ODF2LQ9ULJ1 636 aa23.19■■□□□ 1.3
VPS28-205ENST00000526204 ZNF646O15015 1829 aaPredicted RBP23.19■■□□□ 1.3
VPS28-205ENST00000526204 FRMPD4Q14CM0 1322 aa23.19■■□□□ 1.3
VPS28-205ENST00000526204 SFI1A8K8P3 1242 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 KIF4AO95239 1232 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 VIL1P09327 827 aaKnown RBP23.18■■□□□ 1.3
VPS28-205ENST00000526204 STAT1P42224 750 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 DNA2P51530 1060 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 ZNF131P52739 623 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 HS2ST1Q7LGA3 356 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 LRRC57Q8N9N7 239 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.18■■□□□ 1.3
VPS28-205ENST00000526204 EPB41L5Q9HCM4 733 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 TMEM59LQ9UK28 342 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 PACSIN2Q9UNF0 486 aaPredicted RBP23.18■■□□□ 1.3
VPS28-205ENST00000526204 ZMYM2Q9UBW7 1377 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 PLA2G6O60733 806 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 H2AFZP0C0S5 128 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 NMT1P30419 496 aaKnown RBP23.18■■□□□ 1.3
VPS28-205ENST00000526204 SETQ01105 290 aaPredicted RBP23.18■■□□□ 1.3
VPS28-205ENST00000526204 GUCY2DQ02846 1103 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 LRRC31Q6UY01 552 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 H2AFVQ71UI9 128 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms