RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 HRKO00198 91 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PRC1O43663 620 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA12O60330 932 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 ADAM23O75077 832 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PPFIA4O75335 1185 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 LRG1P02750 347 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 MMEP08473 750 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 AOAHP28039 575 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 TBX4P57082 545 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 YBX1P67809 324 aaKnown RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 PRR5P85299 388 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 GRIN1Q05586 938 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 DBPQ10586 325 aaPredicted RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 RAB3GAP1Q15042 981 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PHYKPLQ8IUZ5 450 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 WDR75Q8IWA0 830 aaKnown RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 FAM126BQ8IXS8 530 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 GPATCH11Q8N954 259 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 JPH3Q8WXH2 748 aaPredicted RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 SSH1Q8WYL5 1049 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 EVI5LQ96CN4 794 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 KIRREL1Q96J84 757 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 NAP1L5Q96NT1 182 aaPredicted RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 SLC6A17Q9H1V8 727 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 MKS1Q9NXB0 559 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 DTLQ9NZJ0 730 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 KLHL14Q9P2G3 628 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 IP6K2Q9UHH9 426 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PNMA8BQ9ULN7 279 aaPredicted RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 ANKRD6Q9Y2G4 727 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA9Q9Y5G4 932 aaKnown RBP6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA8Q9Y5G5 932 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA7Q9Y5G6 932 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA6Q9Y5G7 932 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA3Q9Y5H0 932 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 PCDHGA2Q9Y5H1 932 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 MRFAP1Q9Y605 127 aa6.05□□□□□ -1.44
CD44-220ENST00000525688 CUX1P39880 1505 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 POLA1P09884 1462 aaPredicted RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 KLHL33A6NCF5 533 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 NUDT19A8MXV4 375 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 ABLIM1O14639 778 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 H2AFYO75367 372 aaKnown RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 U2AF1L5P0DN76 240 aaPredicted RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 ENPP1P22413 925 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 MANFP55145 182 aaKnown RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 U2AF1Q01081 240 aaKnown RBP eCLIP6.04□□□□□ -1.44
CD44-220ENST00000525688 PLEKHN1Q494U1 663 aaPredicted RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 ADGRF1Q5T601 910 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 FYB2Q5VWT5 728 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 CXorf57Q6NSI4 855 aaKnown RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 ESPNLQ6ZVH7 1005 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 CBLL1Q75N03 491 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 ATG4DQ86TL0 474 aaPredicted RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 CXorf67Q86X51 503 aaPredicted RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 CILP2Q8IUL8 1156 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 AMOTL1Q8IY63 956 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 ABI1Q8IZP0 508 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 MAGEB6Q8N7X4 407 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 TOE1Q96GM8 510 aaKnown RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 MAML3Q96JK9 1138 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 SEMA4AQ9H3S1 761 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 NGRNQ9NPE2 291 aaKnown RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 CCM2LQ9NUG4 571 aaPredicted RBP6.04□□□□□ -1.44
CD44-220ENST00000525688 GIT1Q9Y2X7 761 aa6.04□□□□□ -1.44
CD44-220ENST00000525688 UBA6A0AVT1 1052 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 OR14I1A6ND48 311 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 ELL2O00472 640 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 HYAL3O43820 417 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 TMEM253P0C7T8 217 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 VCAM1P19320 739 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 SDHBP21912 280 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 ALDH6A1Q02252 535 aaKnown RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 HLTFQ14527 1009 aaKnown RBP eCLIP6.03□□□□□ -1.44
CD44-220ENST00000525688 ODF1Q14990 250 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 TTC38Q5R3I4 469 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 ZC3H14Q6PJT7 736 aaKnown RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 KANSL1Q7Z3B3 1105 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 PNMA8AQ86V59 439 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 AMIGO3Q86WK7 504 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 IRF2BP1Q8IU81 584 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 CMTR2Q8IYT2 770 aaKnown RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 C7orf31Q8N865 590 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 TTC8Q8TAM2 541 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 NUP88Q99567 741 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 FOXB1Q99853 325 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 ZNF277Q9NRM2 450 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 HCFC2Q9Y5Z7 792 aa6.03□□□□□ -1.44
CD44-220ENST00000525688 ZNF608Q9ULD9 1512 aaPredicted RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 TARBP1Q13395 1621 aaKnown RBP6.03□□□□□ -1.44
CD44-220ENST00000525688 GOLGA6CA6NDK9 693 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 GOLGA6BA6NDN3 693 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 MPIG6BO95866 241 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 PRLP01236 227 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 GOLGA6DP0CG33 693 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 MTNR1BP49286 362 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 MLC1Q15049 377 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 LONRF3Q496Y0 759 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 ZMYM1Q5SVZ6 1142 aa6.02□□□□□ -1.45
CD44-220ENST00000525688 CD276Q5ZPR3 534 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms