RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 STILQ15468 1287 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 RNF151Q2KHN1 245 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 ZNF568Q3ZCX4 644 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 FNDC3BQ53EP0 1204 aaKnown RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 ZMAT1Q5H9K5 638 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 TCTN3Q6NUS6 607 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 ZCCHC8Q6NZY4 707 aaKnown RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 LARP4Q71RC2 724 aaKnown RBP eCLIP3.52□□□□□ -1.85
CD44-216ENST00000525293 OTOP2Q7RTS6 562 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 DDX53Q86TM3 631 aaKnown RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 TAX1BP1Q86VP1 789 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 PALM2Q8IXS6 379 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 GIMAP8Q8ND71 665 aaPredicted RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 DNERQ8NFT8 737 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 NEIL1Q96FI4 390 aaPredicted RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 WWC2-AS2Q96NR7 200 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 BOCQ9BWV1 1114 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 KLC2Q9H0B6 622 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 OR10A5Q9H207 317 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 SAMD15Q9P1V8 674 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 ASB1Q9Y576 335 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 TNPO3Q9Y5L0 923 aaKnown RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 B4E1Z4 1266 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 C1QTNF3-AMACRE9PGA6 284 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 M0R2C6 588 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 FOXS1O43638 330 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 GLRX3O76003 335 aaKnown RBP3.51□□□□□ -1.85
CD44-216ENST00000525293 SDHAP31040 664 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 IGFALSP35858 605 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 MECP2P51608 486 aaKnown RBP3.51□□□□□ -1.85
CD44-216ENST00000525293 RAC3P60763 192 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 MOGSQ13724 837 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 ZNF460Q14592 562 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 TBR1Q16650 682 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 ARHGAP44Q17R89 818 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 CATSPEREQ5SY80 951 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 KANK2Q63ZY3 851 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 OTOP1Q7RTM1 612 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 SPRED1Q7Z699 444 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 Q8TCH9 128 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 UBXN4Q92575 508 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 SCYL1Q96KG9 808 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 KIAA1683Q9H0B3 1180 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 FBXO10Q9UK96 956 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 NR2E1Q9Y466 385 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 TCAF1Q9Y4C2 921 aa3.51□□□□□ -1.85
CD44-216ENST00000525293 A0A0G2JNJ9 132 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 TRAF5O00463 557 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 DVL2O14641 736 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 MATN3O15232 486 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 DNAJC8O75937 253 aaPredicted RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 ASMTLO95671 621 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 ASLP04424 464 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 TNFRSF1AP19438 455 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 CR2P20023 1033 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 SDSP20132 328 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 KIF11P52732 1056 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 EIF4HQ15056 248 aaKnown RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 PCOLCEQ15113 449 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 CDSNQ15517 529 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 C21orf62-AS1Q17RA5 79 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 PIK3R6Q5UE93 754 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 TRIM68Q6AZZ1 485 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 GRAMD4Q6IC98 578 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 CC2D1AQ6P1N0 951 aaPredicted RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 FILIP1Q7Z7B0 1213 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 RTKN2Q8IZC4 609 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 CHST14Q8NCH0 376 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 CALML6Q8TD86 181 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 SH3RF3Q8TEJ3 882 aaPredicted RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 CDK5RAP1Q96SZ6 601 aaKnown RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 DPYSL5Q9BPU6 564 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 C12orf65Q9H3J6 166 aaKnown RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 PIF1Q9H611 641 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 CABP5Q9NP86 173 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 TMEM260Q9NX78 707 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 Q9UFV3 132 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 ZFR2Q9UPR6 939 aaKnown RBP3.5□□□□□ -1.85
CD44-216ENST00000525293 TSC22D4Q9Y3Q8 395 aa3.5□□□□□ -1.85
CD44-216ENST00000525293 PTPDC1A2A3K4 754 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 MATN2O00339 956 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 MUSKO15146 869 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 ARHGAP6O43182 974 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 CDC14BO60729 498 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 JMJD7P0C870 316 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 APEX1P27695 318 aaKnown RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 SELENOPP49908 381 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 MRE11P49959 708 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 MEOX1P50221 254 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 STAT5BP51692 787 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 ALDH6A1Q02252 535 aaKnown RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 PABPC4Q13310 644 aaKnown RBP eCLIP3.49□□□□□ -1.85
CD44-216ENST00000525293 CFAP100Q494V2 611 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 HS1BP3Q53T59 392 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 AGBL4Q5VU57 503 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 CDCA2Q69YH5 1023 aaPredicted RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 TMEM200BQ69YZ2 307 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 USP30Q70CQ3 517 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 UBE2R2Q712K3 238 aaPredicted RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 RTN4RL1Q86UN2 441 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms