RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 KIAA1683Q9H0B3 1180 aa2.78□□□□□ -1.96
CD44-212ENST00000524922 AGO3Q9H9G7 860 aaKnown RBP2.78□□□□□ -1.96
CD44-212ENST00000524922 PCDHA8Q9Y5H6 950 aa2.78□□□□□ -1.96
CD44-212ENST00000524922 ABCA5Q8WWZ7 1642 aa2.78□□□□□ -1.96
CD44-212ENST00000524922 CEP170Q5SW79 1584 aa2.78□□□□□ -1.96
CD44-212ENST00000524922 HECW2Q9P2P5 1572 aa2.78□□□□□ -1.96
CD44-212ENST00000524922 ERICH3Q5RHP9 1530 aa2.78□□□□□ -1.97
CD44-212ENST00000524922 UHRF1BP1LA0JNW5 1464 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 PLB1Q6P1J6 1458 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 LMTK3Q96Q04 1460 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 FHAD1B1AJZ9 1412 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 KIF13AQ9H1H9 1805 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 PHLDB1Q86UU1 1377 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 TRBV23-1A0A0A0MS06 115 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 LOC101059915A0A1B0GWI6 518 aaPredicted RBP2.77□□□□□ -1.97
CD44-212ENST00000524922 PDPK1O15530 556 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 CLASP2O75122 1294 aaKnown RBP2.77□□□□□ -1.97
CD44-212ENST00000524922 MAFO75444 373 aaPredicted RBP2.77□□□□□ -1.97
CD44-212ENST00000524922 FAM153BP0C7A2 387 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 KCNA6P17658 529 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 ACO1P21399 889 aaKnown RBP2.77□□□□□ -1.97
CD44-212ENST00000524922 COMTP21964 271 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 PTGS1P23219 599 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 RAC3P60763 192 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 HERVK_113P62684 666 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 DGCR2P98153 550 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 FOXL1Q12952 345 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 LRSAM1Q6UWE0 723 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 Q6ZPA2 131 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 CXXC5Q7LFL8 322 aaKnown RBP2.77□□□□□ -1.97
CD44-212ENST00000524922 FBXW5Q969U6 566 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 ALG1Q9BT22 464 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 PLA2G12BQ9BX93 195 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 CCDC113Q9H0I3 377 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 SLITRK6Q9H5Y7 841 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 INCENPQ9NQS7 918 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 GALNT8Q9NY28 637 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 NUB1Q9Y5A7 615 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 HS3ST3A1Q9Y663 406 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 ADGRL1O94910 1474 aa2.77□□□□□ -1.97
CD44-212ENST00000524922 ADAMTS12P58397 1594 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 PMS2P1A4D2B8 440 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 AQP7O14520 342 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 KCNK3O14649 394 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 ARHGAP6O43182 974 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 CRTAMO95727 393 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 C1SP09871 688 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 GJA4P35212 333 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 SAFB2Q14151 953 aaKnown RBP eCLIP2.76□□□□□ -1.97
CD44-212ENST00000524922 RASA3Q14644 834 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 USP39Q53GS9 565 aaKnown RBP2.76□□□□□ -1.97
CD44-212ENST00000524922 TRIM61Q5EBN2 209 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 CRB2Q5IJ48 1285 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 SPTY2D1Q68D10 685 aaPredicted RBP2.76□□□□□ -1.97
CD44-212ENST00000524922 ABHD17CQ6PCB6 329 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 POLNQ7Z5Q5 900 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 HOMEZQ8IX15 550 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 IFNL2Q8IZJ0 200 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 NLGN4XQ8N0W4 816 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 ZNF808Q8N4W9 903 aaPredicted RBP2.76□□□□□ -1.97
CD44-212ENST00000524922 AMER2Q8N7J2 671 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 GIMAP8Q8ND71 665 aaPredicted RBP2.76□□□□□ -1.97
CD44-212ENST00000524922 DLG3Q92796 817 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 SCLYQ96I15 445 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 BTBD2Q9BX70 525 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 MSL2Q9HCI7 577 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 RIC8BQ9NVN3 520 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 CEP72Q9P209 647 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 PCDHA9Q9Y5H5 950 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 ATP23Q9Y6H3 246 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 CCDC88BA6NC98 1476 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 WIZO95785 1651 aa2.76□□□□□ -1.97
CD44-212ENST00000524922 ABCC2Q92887 1545 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 CCDC66A2RUB6 948 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 FAM221BA6H8Z2 402 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 U2SURPO15042 1029 aaKnown RBP2.75□□□□□ -1.97
CD44-212ENST00000524922 KCNQ2O43526 872 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 MMEP08473 750 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ACRV1P26436 265 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ADCY8P40145 1251 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ECE1P42892 770 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 RRADP55042 308 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 SUMO1P63165 101 aaKnown RBP2.75□□□□□ -1.97
CD44-212ENST00000524922 ADAM8P78325 824 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 GABREP78334 506 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ST5P78524 1137 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 CD83Q01151 205 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 KRTAP1-1Q07627 177 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 PCOLCEQ15113 449 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 LONRF2Q1L5Z9 754 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ZMAT1Q5H9K5 638 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 CATSPEREQ5SY80 951 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 DPP8Q6V1X1 898 aaPredicted RBP2.75□□□□□ -1.97
CD44-212ENST00000524922 OVCH1Q7RTY7 1134 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 SLC7A14Q8TBB6 771 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ASB15Q8WXK1 588 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 FOXRED1Q96CU9 486 aaPredicted RBP2.75□□□□□ -1.97
CD44-212ENST00000524922 SCYL1Q96KG9 808 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 OR10A5Q9H207 317 aa2.75□□□□□ -1.97
CD44-212ENST00000524922 ZNF703Q9H7S9 590 aaPredicted RBP2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms